View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14954_high_1 (Length: 543)
Name: NF14954_high_1
Description: NF14954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14954_high_1 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 24 - 530
Target Start/End: Complemental strand, 28609902 - 28609388
Alignment:
| Q |
24 |
tcttatgtcacatcatttaaaacatgtcacttcaccgttttttgtcaagtatctgaggaagggatcgaaattggagaattttagaacagggagaacaatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609902 |
tcttatgtcacatcatttaaaacatgtcacttcaccgttttttgtcaagtatatgaggaagggatcgaaattggagaattttagaacagggagaacaatt |
28609803 |
T |
|
| Q |
124 |
cccttagcatgtgaaataagaggattaaaattgcaattatgcataaattctaatatacattattaacgaaaagagaactttaccagtgtagcaattgcaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609802 |
cccttagcatgtgaaataagaggattaaaattgcaattatgcataaattctaatatacattattaacgaaaagagaactttaccagtgtagcaattgcaa |
28609703 |
T |
|
| Q |
224 |
atatatttttaaactggatagattttattttcatgttattagatacaaatggagcaatgtgtactgctgcaggtaaccaaaatggaacactatgagcatc |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28609702 |
atatatttttaaactggatagattttattttcatgttattagatacaaatggagcaatgtgtactgctgtaggtaaccaaaatggaacactatgagcatc |
28609603 |
T |
|
| Q |
324 |
--------ggggtaccaaatctaaatacaaaaagaaatctagtgttgtctcaaacattctcaaatttttgttggaaagctttttcaccaaccattattct |
415 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28609602 |
ctataattggggtaccaaatctaaatacaaaacgaaatctagtgttgtctcaaacattctcaaatttatgttggaaagctttttcaccaaccattattct |
28609503 |
T |
|
| Q |
416 |
tattgtttcttcactacaacacctcaaaagcatcattattgtcggtcacctggtttggttgctttcccaaaaccattcctccatacccatattgttgcac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609502 |
tattgtttcttcactacaacacctcaaaagcatcattattgtcgttcacctggtttggttgctttcccaaaaccattcctccatacccatattgttgcac |
28609403 |
T |
|
| Q |
516 |
aactagcactgatga |
530 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28609402 |
aactagcactgatga |
28609388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 531
Target Start/End: Original strand, 437390 - 437517
Alignment:
| Q |
404 |
aaccattattcttattgtttcttcactacaacacctcaaaagcatcattattgtcggtcacctggtttggttgctttcccaaaaccattcctccataccc |
503 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| ||||||| |||| |||||| |||||| ||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
437390 |
aaccattattctcattctgcattcactacaaccactcaaaaccatcgttattggtggtcacatggttgggttgcttttccaaaaccattcccccataccc |
437489 |
T |
|
| Q |
504 |
atattgttgcacaactagcactgatgat |
531 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
437490 |
atattgttgcacaactagcacagatgat |
437517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 530
Target Start/End: Complemental strand, 13653389 - 13653259
Alignment:
| Q |
401 |
accaaccattattcttattgtttcttcactacaaca-cctcaaaagcatcattattgtcggtcacctggtttggttgctttcccaaaaccattcctccat |
499 |
Q |
| |
|
||||||||||||||||||||| ||| || |||| |||||||| |||| ||||| || ||| || || ||||| |||||| |||| |||||||| | |
|
|
| T |
13653389 |
accaaccattattcttattgtgtctatacgacaagttcctcaaaaccatctttattagtggacacatgattaggttgatttcccgaaactattcctccgt |
13653290 |
T |
|
| Q |
500 |
acccatattgttgcacaactagcactgatga |
530 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
13653289 |
acccatattgttgcacaactaacactgatga |
13653259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 524
Target Start/End: Complemental strand, 13660852 - 13660765
Alignment:
| Q |
437 |
cctcaaaagcatcattattgtcggtcacctggtttggttgctttcccaaaaccattcctccatacccatattgttgcacaactagcac |
524 |
Q |
| |
|
|||||||| |||| ||||| || ||| ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
13660852 |
cctcaaaaccatctttattagtggacacatggttaggttgatttcccgaaaccattcctccgtacccatattgttgcacaacgagcac |
13660765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University