View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14954_high_4 (Length: 220)
Name: NF14954_high_4
Description: NF14954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14954_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 42924456 - 42924257
Alignment:
| Q |
18 |
agacacgacaatgacattgtaaatgtaaatgaattaactgaacctaatcacacgtgttacaaagcttatgacgtattttcgaagctaaatatgcacatnn |
117 |
Q |
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| T |
42924456 |
agacacgacaatgacattgtaaatgtaaatgaattaattgaacctaatcacacgtgttacaaagcttatgacgtattttcgaagctaaatatgcacataa |
42924357 |
T |
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| Q |
118 |
nnnnnttgttgct----------cataagcggaatgaagctgggattttctatttgtaacattaccaccattattatcgttaacatcaatgattgaattg |
207 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42924356 |
aaaaattgttgctttgttcataccataagcggaatgaagctgggattttctatttgtaacattaccaccattattattgttaacatcaatgattgaattg |
42924257 |
T |
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