View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14954_low_2 (Length: 541)
Name: NF14954_low_2
Description: NF14954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14954_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 607826 - 608354
Alignment:
| Q |
1 |
tcatcttcatcatctaggtggcatcctatatattttgattttgttgacttggtaccatgcaaggtctccccaactgaatttgcgaaaatgagaaatctta |
100 |
Q |
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| T |
607826 |
tcatcttcatcatctaggtggcatcctatatattttgattttgttgagttggtaccatgcaaggtctccccaactgaatttgtgaaaatgagaaatctta |
607925 |
T |
|
| Q |
101 |
taattaaaaatcaagtagcatgagtaatattaatgtataatataaagggtgaa---aagnnnnnnnnnntcctaaagaatttcaaaatagagttgaggat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
607926 |
taattaaaaatcaagtagcatgagtaatattaatgtataatataaagggtgaagcaaaaaaaaaaaaaatcctaaagaatttcaaaatagagttgaggat |
608025 |
T |
|
| Q |
198 |
aatgtatttataatttataaacttacctggcaaaatataacgcttgtgatgttttggagtactgatcactagagactgctgtgtatgcccctcatgatcc |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
608026 |
aatatatttataatttataaacttacctggcaaaatataacgcttgtgatgttttggagtactgatcactagagactgctgtgtatgcccctcatgatcc |
608125 |
T |
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| Q |
298 |
ataaaaccttgacatgtctttattctctaatgtacaacattatggaaaaattatgctacgatctcagcaaaacgtaacagttttccaaatggaaattcac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
608126 |
ataaaaccttgacatgtctttattctctaatgtacaacattatggaaaaattatgctatgttctcagcaaaacgtaacagttttccaaatggaaattcac |
608225 |
T |
|
| Q |
398 |
cataatgtttttcacgttactttcttaagtgccttattgtcgagtacataagctgtttttcagtttatttccattagcttttcgggatagcttgcataaa |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
608226 |
cataatgtttttcacgttactttcttaagtgccttattgtcgagtccataagctgtttttcagtttatttccattagcttttcgggatagcttgcataaa |
608325 |
T |
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| Q |
498 |
tagcttataacttaaattgaaaacggttt |
526 |
Q |
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|||||||| ||||||||||||||| |||| |
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| T |
608326 |
tagcttattacttaaattgaaaacagttt |
608354 |
T |
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