View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14955_low_2 (Length: 371)
Name: NF14955_low_2
Description: NF14955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14955_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 21484972 - 21484608
Alignment:
| Q |
8 |
actttctctctcctcaaacagtaccatatttcttgcaccatatctgnnnnnnnttacaccagaagaattcttgaacaaaagg-taatcaaacttcaaagt |
106 |
Q |
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| T |
21484972 |
actttctctctcctcaaacagtaccatatttcttgcaccatatctgaaaaaaattacaccagaagaatacttgaacaaaagggtaatcaaacttcaaagt |
21484873 |
T |
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| Q |
107 |
ttttcaagtttgagagaagtttttgaaagataaagttagatcttgttatggagtgtggtttagatctgcatgcaaagttggtgaatgaaacagaacaagt |
206 |
Q |
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| T |
21484872 |
ttttcaagtttgagagaagttttttaaagataaagttagatcttgttatggagtgtggtttagatctgcatgcaaagttggtgaatgaaacagaacaagt |
21484773 |
T |
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| Q |
207 |
tggttttggaaatttagcagaagaaaattggcttaataatactacaaatgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484772 |
tggttttggaaatttagcagaagaaaattggcttaataatactacaaatgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatg |
21484673 |
T |
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| Q |
307 |
ttctatgctgattttccacctttacctgattttccatgcatgtcatcatcatcttcatcttcatc |
371 |
Q |
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| T |
21484672 |
ttctatgctgattttcctcctttacctgattttccatgcatgtcatcatcatcctcatcttcatc |
21484608 |
T |
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