View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14956_low_1 (Length: 449)
Name: NF14956_low_1
Description: NF14956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14956_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 33633035 - 33632608
Alignment:
| Q |
1 |
taaagatgcgtcgaacatataaaccaaagggtctgatttgtctcattcatcaaacaataagaaaatccatattgatacaatgagaccctctttctccaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33633035 |
taaagatgcgtcgaacatataaaccaaagggtctgatttgtctcattcatcaaacaataagaaaatccatattgatacaatgagaccctcttgctccaat |
33632936 |
T |
|
| Q |
101 |
tgaccaatagatgaacatgtattagaattgaatataatcctatatgccatttctgtttctgttgtttttagaacttgtagatggataaataaaatcctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632935 |
tgaccaatagatgaacatgtattagaattgaatataatcctatatgccatttctgtttctgttgtttttagaacttgtagatggataaataaaatcctaa |
33632836 |
T |
|
| Q |
201 |
gcaannnnnnnnnngaaagaaaaatcctaagcaaatttaatgttgctgctaattatatgcttaaaataaaaggtttggcacgcaattgatgatactccac |
300 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632835 |
gcaattttttttttgaaagaaaaatcctatgcaaatttaatgttgctgctaattatatgcttaaaataaaaggtttggcacgcaattgatgatactccac |
33632736 |
T |
|
| Q |
301 |
atctcatatttcccctttttaagaagaagaagacatctcatgtttcccattaacacatcgatttactactcttttccaaaacaaactcaatgtgatgtta |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632735 |
atctcatatttcctctttttaagaagaagaagacatctcatgtttcccattaacacattgatttactactcttttccaaaacaaactcaatgtgatgtta |
33632636 |
T |
|
| Q |
401 |
atcaataatgtatggttatgcaataatt |
428 |
Q |
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|||||||| ||||| ||||||||||||| |
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| T |
33632635 |
atcaataaagtatgattatgcaataatt |
33632608 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 50980404 - 50980311
Alignment:
| Q |
337 |
ctcatgtttcccattaacacatcgatttactactcttttccaaaacaaactcaatgtgatgttaatcaataatgt-atggttatgcaataattg |
429 |
Q |
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||||||||| ||||| | |||| |||||||| |||||||| || | |||||||||||||||||||||||| || ||| ||||| |||||||| |
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| T |
50980404 |
ctcatgttttccattgatacattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagtcatgattatgtaataattg |
50980311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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