View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14956_low_2 (Length: 413)
Name: NF14956_low_2
Description: NF14956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14956_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 395
Target Start/End: Original strand, 42088789 - 42089162
Alignment:
| Q |
21 |
gcagaaaagttctagcaagaaaatttcacttctctcctttctttaagcatcatcatcctcaaggttttgcagtgcagaaggatccttcagacacagcgat |
120 |
Q |
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| T |
42088789 |
gcagaaaagttctagcaagaaaatttcacttctctcctttctttaagcatcttcatcctcaaggttttgcagtgcagaaggatccttcagacacagcgat |
42088888 |
T |
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| Q |
121 |
cgacccacgttatggggttgagaagcgccgtgtgcctactggtccaaacccgttacaccattgattgaatcctcgatttattttgtctaaaccctctggt |
220 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
42088889 |
cgatccacgttatggggttgagaagcgccgtgtgcctactggtccaaacccgttacaccattgattgaattctcgatttattttgtcttaaccctctggt |
42088988 |
T |
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| Q |
221 |
tctcagggaaatgaggtcctgcttggtaacacgatgctatactaaattaatatattttttgttctgttaactttctctttttgatctccatcattgtctg |
320 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42088989 |
tctcaggaaaatgaggtcatgcttggtaacacgatgctatactaaattaatatattttttgttctgttaactttctctttttgatctccattattgtctg |
42089088 |
T |
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| Q |
321 |
catattgatcgatattaatgaattaccagggaccagaattgaccatagtacttttgtgtagtatgatacatacca |
395 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42089089 |
catattgatcgatattaatgaattacca-ggaccagaattgaccatagtacttttgtgtagtatgatgcatacca |
42089162 |
T |
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