View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14957_high_1 (Length: 727)

Name: NF14957_high_1
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14957_high_1
NF14957_high_1
[»] chr8 (5 HSPs)
chr8 (123-589)||(1430688-1431152)
chr8 (18-128)||(1430348-1430463)
chr8 (651-723)||(1431216-1431288)
chr8 (168-224)||(1462550-1462606)
chr8 (665-723)||(38069831-38069888)
[»] chr5 (5 HSPs)
chr5 (511-586)||(15388844-15388919)
chr5 (510-586)||(5249813-5249889)
chr5 (510-579)||(13611380-13611449)
chr5 (654-708)||(15388967-15389023)
chr5 (510-579)||(33642861-33642930)
[»] chr7 (1 HSPs)
chr7 (519-582)||(20437548-20437611)
[»] chr2 (1 HSPs)
chr2 (518-580)||(33470679-33470741)
[»] chr4 (1 HSPs)
chr4 (510-579)||(54132527-54132596)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 123 - 589
Target Start/End: Original strand, 1430688 - 1431152
Alignment:
Q  123 ataaaattataggaggaaaaagtaaaagggatggagtaccttgtgattggatcagagcaattaaattctcccatcagaggaataattacttgatgatctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1430688 ataaaattataggaggaaaaagtaaaagggatggagtaccttgtgattggatcagagcaattaaattctcccatcagaggaataattacttgatgatctt 1430787  T
Q  223 cca-ttcttttagaattcttgttataaagtataaagagagagctttcggtagataaatattgttcaagggctagcctacgaggacttattatatactgtg 321  Q
    ||| || |||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  1430788 ccattttttttagaattcttgttattaag--tagagagagagctttcggtagataaatattgttcaagggctagcctacgaggac---ttatatactgtg 1430882  T
Q  322 tgccgtaacaaacatatattttggagtagtaagttattat--agtataggtaaatatattggtgaattttaaatcgtaacaaactcaacaatatttgatt 419  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1430883 tgccgtaacaaacatatattttggagtagtaagttattattaagtatagatagatatattggtgaattttaaatcgtaacaaactcaacaatatttgatt 1430982  T
Q  420 cttttttaattaggaaaaaatattcttcttcaaaaatgaatttggaagnnnnnnntaatttggtcaagcagttatattaacataaattccattgttactt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||    
T  1430983 cttttttaattaggaaaaaatattcttcttcaaaaatgaatttggaagaaaaaaataatttggtcaagtagttatattaacataaattccattgttactt 1431082  T
Q  520 tttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaatagg 589  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1431083 tttatgtatccaaattcacatcttatgatggagtttttaaagttaggaatgaagattcacacctaatagg 1431152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 1430348 - 1430463
Alignment:
Q  18 aataccttgagggagat-cttctatcacaatcacttctttcatgtctttttcacaatcgctgtaaacaaaatatacgttca----taagatacatacgaa 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  1430348 aataccttgagggagattcttctatcacaatcacttctttcatgtctttttcacaatcgctgtaaacaaaatatacgttcataattaagatacatacgaa 1430447  T
Q  113 ttgaaaataaataaaa 128  Q
    ||||||||||||||||    
T  1430448 ttgaaaataaataaaa 1430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 651 - 723
Target Start/End: Original strand, 1431216 - 1431288
Alignment:
Q  651 aggatttgttatagttttttattgcattggataacaacttcacctttcatattatttttaagatattcttgga 723  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1431216 aggatttgttatagttttttattgcattggataacaacttcacctttcatattatttttaagatattattgga 1431288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 1462606 - 1462550
Alignment:
Q  168 attggatcagagcaattaaattctcccatcagaggaataattacttgatgatcttcc 224  Q
    ||||| ||||||| |||  |||||||||||||||||||||||||||||| |||||||    
T  1462606 attggttcagagcgattggattctcccatcagaggaataattacttgattatcttcc 1462550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 723
Target Start/End: Complemental strand, 38069888 - 38069831
Alignment:
Q  665 ttttttattgcattggataacaacttcacctttcatattatttttaagatattcttgga 723  Q
    |||||||||||||||||||  |||||||||||||| ||| ||| ||||||||| |||||    
T  38069888 ttttttattgcattggatattaacttcacctttcacatt-tttgtaagatattattgga 38069831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 586
Target Start/End: Original strand, 15388844 - 15388919
Alignment:
Q  511 ttgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaat 586  Q
    ||||| |||||||||||||||| |||||||  ||||||| | ||||| |||||| ||||||||||||||| |||||    
T  15388844 ttgttcctttttatgtattcaagttcacatcatatgatgaaatttttgaagttaagaatgaagattcacacctaat 15388919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 586
Target Start/End: Original strand, 5249813 - 5249889
Alignment:
Q  510 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatctaat 586  Q
    |||||| ||||||||| |||||| || ||||  ||||||| | |||||||||||| ||||||||||||||| |||||    
T  5249813 attgttcctttttatgcattcaactttacatcatatgatgaaatttttaaagttaagaatgaagattcacacctaat 5249889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 13611449 - 13611380
Alignment:
Q  510 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcac 579  Q
    ||||||| |||| ||| | |||||||||||| |||||||| | ||||||||| || |||| |||||||||    
T  13611449 attgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaagctaagaattaagattcac 13611380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 708
Target Start/End: Original strand, 15388967 - 15389023
Alignment:
Q  654 atttgttatagttt--tttattgcattggataacaacttcacctttcatattatttt 708  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||||| ||| ||||    
T  15388967 atttgttatagtttcttttattgcattggatattaacttcacctttcacattttttt 15389023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 33642930 - 33642861
Alignment:
Q  510 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcac 579  Q
    ||||||| |||| ||| | |||||||||||| |||||||| | ||||||||| || |||| |||||||||    
T  33642930 attgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaagctaagaattaagattcac 33642861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 582
Target Start/End: Original strand, 20437548 - 20437611
Alignment:
Q  519 ttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcacatc 582  Q
    ||||||| |||  |||||||||  ||||||| | |||||||||||| |||||||||||||||||    
T  20437548 ttttatgcatttcaattcacatcatatgatgaaatttttaaagttaagaatgaagattcacatc 20437611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 580
Target Start/End: Complemental strand, 33470741 - 33470679
Alignment:
Q  518 tttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcaca 580  Q
    |||||||| |||||| |||||||  ||||||| |  ||||||||||| |||||||||||||||    
T  33470741 tttttatgcattcaagttcacatcatatgatgaaaattttaaagttaagaatgaagattcaca 33470679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 579
Target Start/End: Complemental strand, 54132596 - 54132527
Alignment:
Q  510 attgttactttttatgtattcaaattcacattttatgatggagtttttaaagttaggaatgaagattcac 579  Q
    ||||||| |||| ||| | |||||||||||| |||||||| | ||||||||| || |||| |||||||||    
T  54132596 attgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaagctaagaattaagattcac 54132527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University