View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14957_high_12 (Length: 341)

Name: NF14957_high_12
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14957_high_12
NF14957_high_12
[»] chr5 (16 HSPs)
chr5 (57-319)||(31493870-31494132)
chr5 (53-341)||(31416280-31416568)
chr5 (55-341)||(31407158-31407435)
chr5 (66-341)||(31475688-31475963)
chr5 (66-341)||(40843070-40843345)
chr5 (53-317)||(31395852-31396116)
chr5 (55-317)||(31643616-31643878)
chr5 (53-273)||(31284854-31285074)
chr5 (55-264)||(31317504-31317713)
chr5 (66-278)||(31279232-31279444)
chr5 (76-283)||(31281560-31281766)
chr5 (116-314)||(31368668-31368866)
chr5 (1-55)||(31493442-31493496)
chr5 (53-207)||(31505630-31505784)
chr5 (152-276)||(31288620-31288742)
chr5 (76-276)||(31330061-31330264)
[»] chr4 (2 HSPs)
chr4 (170-314)||(6037823-6037967)
chr4 (69-249)||(8039298-8039478)
[»] chr3 (1 HSPs)
chr3 (102-250)||(25708597-25708745)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 57 - 319
Target Start/End: Original strand, 31493870 - 31494132
Alignment:
Q  57 atcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagact 156  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31493870 atcctaggtaaaagtaaataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgatagcaaaggcagcacatgttattagact 31493969  T
Q  157 atatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaaga 256  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  31493970 atatgcatctggttttccattcaccactttaccaaagaaaaatgaatagacagaggtgattgttaataccagaaaagctgtatgagctttgaaccgaagc 31494069  T
Q  257 cttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaaga 319  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  31494070 cttcttgagttttgccatatatgtgcatacaaaatcatgaggcagatgatgaaactgaaaaga 31494132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 53 - 341
Target Start/End: Original strand, 31416280 - 31416568
Alignment:
Q  53 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 152  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||| | || ||| |  ||||    
T  31416280 aaacatcctagataaaagtacataagatcaacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaagaagtacacgaaatta 31416379  T
Q  153 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccg 252  Q
    || ||||| ||||||||||||||||||  | ||||||| ||||||||||||| ||||  |||||||| ||||| ||||||||||||||||||||||||||    
T  31416380 gagtatatgcatctggttttccattcataattttatcagagaaaaatgaatagacagcagtgattgtcaatactagaaaagctgtatgagctttgaaccg 31416479  T
Q  253 aagacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaaca 341  Q
    |||||||||||||||||||||| ||| ||||||||| |||| |||| |||||||||||||| |||||||  ||||||||||||||||||    
T  31416480 aagacttctagagttttgccatgtatttgcatacaaaatcaggaggcagatgatgaaactggaaagagtataaagaattaccttcaaca 31416568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 55 - 341
Target Start/End: Original strand, 31407158 - 31407435
Alignment:
Q  55 acatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattaga 154  Q
    |||||| ||| ||||||| | |||||| ||||| | ||| ||||||  ||| || |||||||| |  |||||||||| |||||| |||||||  || |      
T  31407158 acatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgccttgacaagctcattgacatgatagcaaaggcggcacatgaaatcaag 31407257  T
Q  155 ctatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaa 254  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  31407258 ctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaa 31407357  T
Q  255 gacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaaca 341  Q
    ||||||||||||||| |||||||| ||||||||| |||         ||||||||||||||||||||| |||||| || ||||||||    
T  31407358 gacttctagagtttttccatatatttgcatacaaaatc---------atgatgaaactgaaaagagtgtaaagaaatatcttcaaca 31407435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 66 - 341
Target Start/End: Original strand, 31475688 - 31475963
Alignment:
Q  66 aaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatc 165  Q
    ||||||| | |||||| ||||| ||||| ||||||  ||| ||||| || || || |||||||||| |||||||||||| |  || || |||||  ||||    
T  31475688 aaaagtaaagaagatccacttcgaatccacactgagattgcctcgagaaactcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcatc 31475787  T
Q  166 tggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagag 265  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||     
T  31475788 tggttttccatttaccactttatcgaagtaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagac 31475887  T
Q  266 ttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaaca 341  Q
    | || |||||||| | ||||||| ||||||| | | |||||||||||||||| |||| ||||||||| ||||||||    
T  31475888 tgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaaca 31475963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 66 - 341
Target Start/End: Original strand, 40843070 - 40843345
Alignment:
Q  66 aaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatc 165  Q
    ||||||| | |||||| ||||| ||||| || |||  ||| |||||||| || || |||||||||| |||||||||||| |  || || |||||  ||||    
T  40843070 aaaagtaaagaagatccacttcgaatccacaatgagattgcctcgacaaactcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcatc 40843169  T
Q  166 tggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagag 265  Q
    |||||||||||| ||||||||||| ||| |||| ||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||     
T  40843170 tggttttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagac 40843269  T
Q  266 ttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaagagtgaaaagaattaccttcaaca 341  Q
    | || |||||||| | ||||||| ||||||| | | |||||||||||||||| |||| ||||||||| ||||||||    
T  40843270 tgtttccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagtgtaaagaattatcttcaaca 40843345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 317
Target Start/End: Complemental strand, 31396116 - 31395852
Alignment:
Q  53 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 152  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||||||  ||||    
T  31396116 aaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcgacaagctaagtgacatcatagaaaaggcagcacatgaaatta 31396017  T
Q  153 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccg 252  Q
    |||||||| ||||||||||||||||||  | ||||||  ||||||| ||||| | ||| || ||||| ||||| ||||| |||| |||||||||||| ||    
T  31396016 gactatatgcatctggttttccattcataattttatctgagaaaaaggaataaatagaggtaattgtcaataccagaaacgctgaatgagctttgaatcg 31395917  T
Q  253 aagacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaa 317  Q
    | ||||  | |||| ||||||| |   ||||||||| || |||  | ||||||||||||||||||    
T  31395916 atgactagtcgagtgttgccatgttcttgcatacaaaattatggagcagatgatgaaactgaaaa 31395852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 55 - 317
Target Start/End: Original strand, 31643616 - 31643878
Alignment:
Q  55 acatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattaga 154  Q
    |||||| ||| ||||||| | |||||||| |||||||||||||| | ||||  ||||||| ||||| |||||||||| ||||| |||||| |  || ||     
T  31643616 acatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagtttgcgtcgacaaactaagtgacatgatagcaaaggaagcacaagaaatgagg 31643715  T
Q  155 ctatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaa 254  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||| | | | ||||| || |||||||| ||||    
T  31643716 ctatatgcatctggttttccattcaccactttatcaaagaaaaatgaatataacgaagtgattgttaataccaaatatgctgtgtgtgctttgaatcgaa 31643815  T
Q  255 gacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactgaaaa 317  Q
     |||||| |||  |||||| || | |||| | || |||||||||  |||||||||||||||||    
T  31643816 tacttcttgagggttgccacatttttgcaaataaaatcatgaggctgatgatgaaactgaaaa 31643878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 273
Target Start/End: Complemental strand, 31285074 - 31284854
Alignment:
Q  53 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 152  Q
    |||||||| ||  ||||||| | || |||||||||||||||||| ||| |||| |  ||||| || |   ||||||||| ||||| ||||||||  || |    
T  31285074 aaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgccgtgacaaactcattaacatgatagaaaaggaagcacatgaaatga 31284975  T
Q  153 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccg 252  Q
    | |||||| |||||||||||||||| || ||||||||||||||||||||||| |  || |||||||| ||||| | ||| || | |||||||||||||||    
T  31284974 ggctatatgcatctggttttccattaactactttatcaaagaaaaatgaatataatgaggtgattgtcaataccaaaaacgcagcatgagctttgaaccg 31284875  T
Q  253 aagacttctagagttttgcca 273  Q
    ||||||||| |||||||||||    
T  31284874 aagacttctcgagttttgcca 31284854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 264
Target Start/End: Complemental strand, 31317713 - 31317504
Alignment:
Q  55 acatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattaga 154  Q
    |||||| ||| |||| || | |||||| | ||||||||| |||||| |||| || ||||| ||||| ||||| |||| ||||||||||||||  |||| |    
T  31317713 acatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgccttgacaaactaagtgacataatagcaaaggcagcacatgaaattaaa 31317614  T
Q  155 ctatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaa 254  Q
    |||||| |||||||||| |||||||  ||||||||||||||||| ||||| |  || |||| ||| ||||| ||||| || | |||||||||||| ||||    
T  31317613 ctatatgcatctggtttcccattcatgactttatcaaagaaaaaggaatagattgaagtgagtgtcaataccagaaatgccgaatgagctttgaatcgaa 31317514  T
Q  255 gacttctaga 264  Q
    |||| |||||    
T  31317513 gactgctaga 31317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 66 - 278
Target Start/End: Original strand, 31279232 - 31279444
Alignment:
Q  66 aaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatc 165  Q
    ||||||| | |||||| |||||||||||||||||| |||| | |||||| ||||| |||||||||| ||||| ||||||||  || || |||||| ||||    
T  31279232 aaaagtaaagaagatcaacttcaaatccgcactgagtttgccgcgacaaactaagtgacatgatagcaaaggaagcacatgaaatgaggctatatccatc 31279331  T
Q  166 tggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagag 265  Q
     ||||| ||||||| || |||||| |||||||||||||| |  || || ||||| ||||| | | | ||||| || |||||||| ||||||||||| |||    
T  31279332 aggtttcccattcatcaatttatcgaagaaaaatgaatatagcgaggtcattgtcaataccaaatatgctgtgtgtgctttgaatcgaagacttcttgag 31279431  T
Q  266 ttttgccatatat 278  Q
    | | |||||||||    
T  31279432 tgtcgccatatat 31279444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 283
Target Start/End: Complemental strand, 31281766 - 31281560
Alignment:
Q  76 aagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggttttcca 175  Q
    |||||| ||| | |||||||||||| |||| ||  |||| || || |||||||||| |||||| |||||||  |||||||| ||| ||||||||||||||    
T  31281766 aagatccactacgaatccgcactgagtttgccttaacaaacttagtgacatgatagcaaaggcggcacatgaaattagactgtatgcatctggttttcca 31281667  T
Q  176 ttcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagagttttgccata 275  Q
    |||| |||||||||||||||||| |||||||  || |||||||||||||| | | | || |  || |||||||| ||||||||||| |||| | ||||||    
T  31281666 ttcatcactttatcaaagaaaaaggaatacagcgaagtgattgttaatacca-atatgccgagtgtgctttgaagcgaagacttcttgagtgtcgccata 31281568  T
Q  276 tatgtgca 283  Q
    ||| ||||    
T  31281567 tatttgca 31281560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 314
Target Start/End: Complemental strand, 31368866 - 31368668
Alignment:
Q  116 ctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtga 215  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| |||||||||| |||||||  ||||||| | ||||||| ||||| |   | ||||    
T  31368866 ctaagtgacataatagcaaaggcagcacatgaaattagactatatgcatctggtttcccattcatgactttattagagaaaaaggaatagattaaagtga 31368767  T
Q  216 ttgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagagttttgccatatatgtgcatacaagatcatgaggaagatgatgaaactga 314  Q
     ||| ||||| ||||| || | |||||||||||| || ||||||||||| | |||| || | |||||| | || ||||  | | |||||||||||||||    
T  31368766 gtgtcaataccagaaatgccgaatgagctttgaatcggagacttctagaatgttgcaatttctgtgcaaataaaatcaccaagcagatgatgaaactga 31368668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31493442 - 31493496
Alignment:
Q  1 tcggatgaattccaccattgacccaactatctaaccctgcatctggtgtaagaaa 55  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31493442 tcggatgaattccaccattgacccaactatctaaccctgcatctagtgtaagaaa 31493496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 31505630 - 31505784
Alignment:
Q  53 aaacatcctaggtaaaagtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttatta 152  Q
    |||||||| ||  ||||||| | |||||| || ||||||||||||||| |||| | |||||| || ||||||||||||| ||||| ||||| ||  || |    
T  31505630 aaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgcgacaaactgagcgacatgatagcaaaggaagcacttgaaatga 31505729  T
Q  153 gactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacac 207  Q
    | |||||| |||||||||| ||||| | || ||||||  ||||||| ||||||||    
T  31505730 ggctatatgcatctggtttcccattaatcattttatcggagaaaaaggaatacac 31505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 31288742 - 31288620
Alignment:
Q  152 agactatatacatctggttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaacc 251  Q
    ||||||||| ||| |||||||  |||||| |||||||| ||||||||||||||||  || |||||||| ||||| |  |||||||| |||||||||||||    
T  31288742 agactatatgcatatggtttt--attcactactttatcgaagaaaaatgaatacagtgaggtgattgtaaataccaagaaagctgtctgagctttgaacc 31288645  T
Q  252 gaagacttctagagttttgccatat 276  Q
    ||| | |||| |||| || ||||||    
T  31288644 gaatagttcttgagtgtttccatat 31288620  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 276
Target Start/End: Complemental strand, 31330264 - 31330061
Alignment:
Q  76 aagatcgacttcaaatccgcactgaatttgg---ctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggtttt 172  Q
    |||||||| |||||||||||| ||| ||| |   |||||||| ||||||| | ||| || |||||  |||||||  || ||||||||| |||||||| ||    
T  31330264 aagatcgatttcaaatccgcattgagttttgttcctcgacaaactaagcgccgtgacagcaaaggatgcacatgaaatgagactatatgcatctggtgtt 31330165  T
Q  173 ccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaaccgaagacttctagagttttgcc 272  Q
      || ||  | ||||||||| ||| ||||||| |  || |||||||  ||||||| | | | |||||| |||| ||||| | ||||||| |||| |||||    
T  31330164 atatgcattaatttatcaaaaaaatatgaatatagcgacgtgattgccaatacaacatatgttgtatgcgcttggaaccaacgacttcttgagtgttgcc 31330065  T
Q  273 atat 276  Q
    ||||    
T  31330064 atat 31330061  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 6037823 - 6037967
Alignment:
Q  170 tttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaata-caagaaaagctgtatgagctttgaaccgaagacttctagagttt 268  Q
    |||||||||| ||||||||  ||||||||||| || || ||||||||||| |||| |||| |||||||||||| ||||||||  ||||||||||||||      
T  6037823 tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaag-aaagctgtatgaactttgaacaaaagacttctagagtgg 6037921  T
Q  269 tgccatatatgtgcatacaagatcatgaggaagatgatgaaactga 314  Q
    | |||||||| |||||| || ||||||||  |||||||||||||||    
T  6037922 ttccatatatttgcatataaaatcatgagccagatgatgaaactga 6037967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 8039478 - 8039298
Alignment:
Q  69 agtacataagatcgacttcaaatccgcactgaatttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctgg 168  Q
    ||||||| ||||  ||||| ||||||||||||||||| ||| ||||  |||| || |||||||||||||  | |||||  |||||||||||| |||| ||    
T  8039478 agtacatgagattcacttcgaatccgcactgaatttgtctcaacaaattaagtgaaatgataggaaaggatgtacatgaaattagactatatgcatcagg 8039379  T
Q  169 ttttccattcaccactttatcaaagaaaaatgaatacacagatgtgattgttaatacaagaaaagctgtatgagctttgaa 249  Q
    |||||||||||  | ||||||| ||||||| ||||| ||||| || |||||  |||| | ||| |||| ||||||||||||    
T  8039378 ttttccattcataattttatcagagaaaaaggaatatacagaagtaattgtcgataccaaaaatgctgaatgagctttgaa 8039298  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 250
Target Start/End: Complemental strand, 25708745 - 25708597
Alignment:
Q  102 tttggctcgacaagctaagcgacatgataggaaaggcagcacatgttattagactatatacatctggttttccattcaccactttatcaaagaaaaatga 201  Q
    |||| |||||||| || || |||||||||| ||||||||||||||  || || |||||  ||||||||||  ||||||||||||||||| | | ||| ||    
T  25708745 tttgtctcgacaaactgagtgacatgatagcaaaggcagcacatgaaatgaggctataagcatctggtttctcattcaccactttatcatatataaaaga 25708646  T
Q  202 atacacagatgtgattgttaatacaagaaaagctgtatgagctttgaac 250  Q
    ||| || || ||||  || || |||| ||| || |||||||||||||||    
T  25708645 ataaactgaggtgagggtcaaaacaaaaaaggcggtatgagctttgaac 25708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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