View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_high_13 (Length: 337)
Name: NF14957_high_13
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 140 - 309
Target Start/End: Original strand, 37998619 - 37998788
Alignment:
| Q |
140 |
ctaataatggtatgaaagtatcttggttatactgataaaattacagtgctttgtttatactgatcaaacacatgtgagcgacatctaacctttattgtta |
239 |
Q |
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| T |
37998619 |
ctaataatggtatgaaagtatcttggttatactgataaaattacaatgctttgtttatactgatcaaacacatgtgagcgacatctaacctttattgtta |
37998718 |
T |
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| Q |
240 |
caaaaatgggatacatgataagaaataagatatagaaaattgacagtaagactaaaataagttcagtatg |
309 |
Q |
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| T |
37998719 |
caaaaatgggttacatgataagaaataagatatagaaaattgacagtaagactaaaataagttcagtatg |
37998788 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 37998509 - 37998554
Alignment:
| Q |
30 |
atatcactattttcgtgtcacattctcctgtcaatatatacaacag |
75 |
Q |
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| T |
37998509 |
atatcactattttcgtgtcacattctcctgtcaatatatacaacag |
37998554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 1648159 - 1648225
Alignment:
| Q |
243 |
aaatgggatacatgataagaaataagatatagaaaattgacagtaagactaaaataagttcagtatg |
309 |
Q |
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| T |
1648159 |
aaatgggatacatgataaccaataagatatagaaaattgtaggtaagactaaaataagttcagtatg |
1648225 |
T |
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