View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_high_14 (Length: 333)
Name: NF14957_high_14
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29519578 - 29519894
Alignment:
| Q |
1 |
atcttaattttattacaatagtagttaatgttggctttccaaatttcatacaagggaaatgacatgggagttttcattaaagctaacatagcttggacac |
100 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519578 |
atcttaattttattacagaagtagttaacgttggctttccaaatttcatacaaggaaaatgacatgggagttttcattaaagctaacatagcttggacac |
29519677 |
T |
|
| Q |
101 |
tcgagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttaattggtgtgattctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
29519678 |
tcgagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttacttggtgtgatcctt |
29519777 |
T |
|
| Q |
201 |
ttagtaacaatattaataacattaacaaaaccagtacccaagaagtaactaagtgacatggacacaaatgtgaatgaagtgatttcatcgttgaaggtgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519778 |
ttagtaacaatattaataacattaacaaaaccagtactcaagaagtaactaagtgacatggacacaaatgtgaatgaagtgatttcatcgttgaaggtgc |
29519877 |
T |
|
| Q |
301 |
ttctctgtagaagaatt |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
29519878 |
ttctctgtagaagaatt |
29519894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 5332478 - 5332192
Alignment:
| Q |
1 |
atcttaattttattacaatagtagttaatgttggctttccaaatttcatacaagggaaatgacatgggagttttcattaaagctaacatagcttggacac |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332478 |
atcttaattttattacaattgtagttaatgttggctttccaaatttcatacaagggaaatgacatgggagttttcattaaagctaacatagcttggacac |
5332379 |
T |
|
| Q |
101 |
tcgagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttaattggtgtgattctt |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
5332378 |
t-gagataaccatgttgctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttacttggtgtgatcctt |
5332280 |
T |
|
| Q |
201 |
ttagtaacaatattaataacattaacaaaaccagtacccaagaagtaactaagtgacatggacacaaatgtgaatgaagtgatttcat |
288 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332279 |
ttagtaacaatattaataacattaacaaaaccagtactcaagaagtaactaagtgacatggacacaaatgtgaatgaagtgatttcat |
5332192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 117 - 317
Target Start/End: Original strand, 37981878 - 37982085
Alignment:
| Q |
117 |
gctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttaattggtgtgattcttttagtaacaatattaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||| |
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| T |
37981878 |
gctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttacttggtgtgatccttttagtaacagtgttaa |
37981977 |
T |
|
| Q |
217 |
taacattaacaaaaccagtacccaagaagtaactaagtgacatggacacaaatgtgaatg-------aagtgatttcatcgttgaaggtgcttctctgta |
309 |
Q |
| |
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|||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
37981978 |
taacattaacaaaaacagtacttaagaagtaaccaagtgacatggacaaaaatgtgaatgaagttgaaagtgatttcatggttgaaggtgcttctctgta |
37982077 |
T |
|
| Q |
310 |
gaagaatt |
317 |
Q |
| |
|
|||||||| |
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|
| T |
37982078 |
gaagaatt |
37982085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 45661592 - 45661460
Alignment:
| Q |
117 |
gctaagaaccaataaaacaagttcaaattgttttgatttaaatcaaaaccttgtaaccaaccttgtttaattggtgtgattcttttagtaacaatattaa |
216 |
Q |
| |
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|||| ||||||||| |||| ||||||||| ||||||| |||||||| || |||||||||||||||||| | || || || ||||| ||||||| ||||| |
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| T |
45661592 |
gctaggaaccaatagaacaggttcaaattactttgattcaaatcaaacccatgtaaccaaccttgtttactaggagtaatccttttggtaacaacattaa |
45661493 |
T |
|
| Q |
217 |
taacattaacaaaaccagtacccaagaagtaac |
249 |
Q |
| |
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| | ||| |||||| |||| | || |||||||| |
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|
| T |
45661492 |
tcaaattgacaaaaacagtgctcaggaagtaac |
45661460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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