View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_high_17 (Length: 316)
Name: NF14957_high_17
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_high_17 |
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| [»] scaffold0421 (1 HSPs) |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 295
Target Start/End: Complemental strand, 4101 - 3809
Alignment:
| Q |
3 |
attcttgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttgggacaaatgtaatattctaaatttcatt |
102 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
4101 |
attcttgatcttatgattttgtagtagctttagatgttttctgagttgtctcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttcatt |
4002 |
T |
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| Q |
103 |
gattatatataaattatgtaaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccgcaagtatatg |
202 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4001 |
gattatatataaattatgtcaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccgccagtatatg |
3902 |
T |
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| Q |
203 |
tccgctaatacaaagccccctgttctttttggatcagctcccccactgttgcagttcnnnnnnnggataatcttttaagactaatatatctat |
295 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3901 |
tccgctaatacaaagccccctgttctttttagatcagctcccccattgttgcagttctttttttggataatcttttaagactaatatatctat |
3809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 39437943 - 39437652
Alignment:
| Q |
1 |
tgattcttgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttgggacaaatgtaatattctaaatttca |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| | |
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| T |
39437943 |
tgattcttgatcttatgatgttgtagtagctttagatgttttctgagttgtctcgcaaagtgacatgtaatttggggcaaatgtaatattttaaatttaa |
39437844 |
T |
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| Q |
101 |
ttgattatatataaattatgtaaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccgcaagtata |
200 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39437843 |
ttgattatatataaattacgtaaacagttagaaattacattaattgtgatatatatatccaattgaaaatatcaaatatgctagtatatccgccagtata |
39437744 |
T |
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| Q |
201 |
tgtccgctaatacaaagccccctgttctttttggatcagctcccccactgttgcagttcnnnnnnnggataatcttttaagactaatatatctatctat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
39437743 |
tgtccgctaatacaaagccccctgttctttttggataagctcccccacagtttttttt-------tggataatcttttaagactaatatatctatctat |
39437652 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 14186750 - 14186468
Alignment:
| Q |
1 |
tgattcttgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttgggacaaatgtaatattctaaatttca |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14186750 |
tgattcttgatcttatgatgttgtagtagctttagatgttttttgagttgcctcgcaaagtgacatgtaat----------------attctaaatttca |
14186667 |
T |
|
| Q |
101 |
ttgattatatataaattatgtaaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccgcaagtata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
14186666 |
ttgattatatataaattatgtaaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccaccagtata |
14186567 |
T |
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| Q |
201 |
tgtccgctaatacaaagccccctgttctttttggatcagctcccccactgttgcagttcnnnnnnnggataatcttttaagactaatatatctatctat |
299 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14186566 |
tgtccgctaacacaaagccccctgttctttttggatcagctcccccactgttgcagttctttttttggataatcttttaagactaatatatctatctat |
14186468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 29118 - 28833
Alignment:
| Q |
1 |
tgattcttgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttgggacaaatgtaatattctaaatttca |
100 |
Q |
| |
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|||| ||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
29118 |
tgatacttgatcgtatgatgttgtagtagttttagatgttttcttagttgcctcgcaaagtgacatataatttggggtaaatgtaatattttaaatttca |
29019 |
T |
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| Q |
101 |
ttgattatatataaattatgtaaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccgcaagtata |
200 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29018 |
ttgattatata--aattctgtcaatagttagaaattacattaattgtgatatatacatccaattgaaaatatcaaatatgctagtatatccgccagtata |
28921 |
T |
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| Q |
201 |
tgtccgctaatacaaagccccctgttctttttggatcagctcccccactgttgcagttcnnnnnnnggataatcttttaagactaata |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
28920 |
tgtccgctaatacaaagccccctgttctttttggatcagctcccccattgttgctgttcttattttggataatcttttaagactaata |
28833 |
T |
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