View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_high_18 (Length: 303)
Name: NF14957_high_18
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 39516496 - 39516205
Alignment:
| Q |
1 |
tgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagc |
100 |
Q |
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| T |
39516496 |
tgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagc |
39516397 |
T |
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| Q |
101 |
ggattctgttttctctcagttgaaaatagatgatgctagatagattttcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagat |
200 |
Q |
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| T |
39516396 |
agattctgttttctctcagttgaaaatagatgatgctagatagatattcatgttttctcacaagtgtctcaagtaagtggaggagctgtttttattagat |
39516297 |
T |
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| Q |
201 |
ggctcacttccctcttttgtccttgtttccttgtatttttcatacttagttatggttgttggtctattcttaatcgtaagactaatgatgat |
292 |
Q |
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| T |
39516296 |
ggctcacttccctcttttgtccttgtttccttgtatttttcatacttggttatggttgttggtctattcttaattgtaagactaatgatgat |
39516205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39509428 - 39509276
Alignment:
| Q |
1 |
tgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtctatgtctattggtagagttattgatgaatctgatagtgcagc |
100 |
Q |
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|||| |||||||||||||| ||||||||| |||||||||||||| |||||| | ||||||||||||| || ||||||||||||||||||||||| | |
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| T |
39509428 |
tgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatgatatgtctatgtctattttgagggttattgatgaatctgatagtgctgg |
39509329 |
T |
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| Q |
101 |
ggattctgttttctctcagttgaaaatagatgatgctagatagattttcatgt |
153 |
Q |
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| T |
39509328 |
gcattctgttttctctgagttgaaccttgatgatgccagatagattttcatgt |
39509276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 39509245 - 39509197
Alignment:
| Q |
161 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctcactt |
209 |
Q |
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| T |
39509245 |
caagtgtctcaagtaagtggaggagctgtttttattagatggctgactt |
39509197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39542508 - 39542449
Alignment:
| Q |
1 |
tgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatgacacgtcta |
60 |
Q |
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|||||||||||| ||||| |||||||||||| |||||| ||||| ||||| |||||||| |
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| T |
39542508 |
tgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtcta |
39542449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 39509070 - 39509016
Alignment:
| Q |
200 |
tggctcacttccctcttttgtccttgtttccttgtattttt-catacttagttat |
253 |
Q |
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|||||||||| || |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
39509070 |
tggctcacttatctgttttgtccttgtttccttgtatttttacatccttagttat |
39509016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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