View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14957_high_2 (Length: 596)
Name: NF14957_high_2
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Complemental strand, 28607010 - 28606461
Alignment:
| Q |
17 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607010 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
28606911 |
T |
|
| Q |
117 |
ttgtcatgatgaagtaacatatctgtgattaacttaaaagaaagtaccagcaaatttaagcccgatggaactaattgttgtttacaaagctaattggcat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28606910 |
ttgtcatgatgaagtaacatatctgtgaataacttaaaagaaagtaccagcaaattta-------------taattgttgtttacaaagctaattggcat |
28606824 |
T |
|
| Q |
217 |
taacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgttcattgaagta |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606823 |
taacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgttcattgaagta |
28606724 |
T |
|
| Q |
317 |
tccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgttgcaagatgttt |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28606723 |
tccattatcagctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgttgcaagatgttt |
28606624 |
T |
|
| Q |
417 |
ttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgtttta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606623 |
ttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggcacctacgtttta |
28606524 |
T |
|
| Q |
517 |
ggtaggcagcatgtgtagtatctaacgttggatccactgtggggtatagtctgtggaccaaat |
579 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606523 |
ggtaggcagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaat |
28606461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 206 - 579
Target Start/End: Complemental strand, 28636619 - 28636246
Alignment:
| Q |
206 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
305 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636619 |
ctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaattgaacagcccttgagaattgt |
28636520 |
T |
|
| Q |
306 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgtt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28636519 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtggctaattcttcatccacagttagaagacccttatgtt |
28636420 |
T |
|
| Q |
406 |
gcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggca |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636419 |
gcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggca |
28636320 |
T |
|
| Q |
506 |
cctacgttttaggtaggcagcatgtgtagtatctaacgttggatccactgtggggtatagtctgtggaccaaat |
579 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28636319 |
cctacgttttaggtaggtagcatgtgtaggatctaacgttggatccactgtggggtatagtctgtggaccaaat |
28636246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 206 - 576
Target Start/End: Complemental strand, 28664189 - 28663819
Alignment:
| Q |
206 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattctccgataacaattgaacagcccttgagaattgt |
28664090 |
T |
|
| Q |
306 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgtt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28664089 |
tcattgaagtatccattatcagctgccatttttttcacataaggtgatgttcttggatcagtagctagttcttcatccactgttagaagacccttatgtt |
28663990 |
T |
|
| Q |
406 |
gcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggca |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
28663989 |
gcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttctatcatttcttgcatatagaacagcatttggatctggatttggtgttgggca |
28663890 |
T |
|
| Q |
506 |
cctacgttttaggtaggcagcatgtgtagtatctaacgttggatccactgtggggtatagtctgtggacca |
576 |
Q |
| |
|
||| ||||||| |||||||||| ||| | |||| | |||| ||||| |||||||||||||| ||||||| |
|
|
| T |
28663889 |
tctaagttttagataggcagcatatgtggggtctagctttgggtccaccgtggggtatagtctatggacca |
28663819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 206 - 576
Target Start/End: Complemental strand, 28657113 - 28656743
Alignment:
| Q |
206 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattctctgataacaattgaacagcccttgagaattgt |
305 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28657113 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattctctgataacaaaagaacagcccttgagaattgg |
28657014 |
T |
|
| Q |
306 |
tcattgaagtatccattatcagctgccatctttttcacataaggtgatgttcttggatcagtggctagttcttcatccacagttagaagacccttatgtt |
405 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28657013 |
tcattgaagtaaccattatcatctgccattttttgtacataaggtgatgttattgggtcagtggctagttcttcatccacagttagaagacccttatgtt |
28656914 |
T |
|
| Q |
406 |
gcaagatgtttttgtagtagttgttgtcaattatcattggtgtttttagatcattcctcacatattggacagcttttggatctggatttggtgttgggca |
505 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | ||| |||||| |||| || |
|
|
| T |
28656913 |
gcaaaatgttcttgtagtagttgttgtcaattatcaatggagtttttagatcattccttacatattggacagcttttgcctttgggtttggttttggaca |
28656814 |
T |
|
| Q |
506 |
cctacgttttaggtaggcagcatgtgtagtatctaacgttggatccactgtggggtatagtctgtggacca |
576 |
Q |
| |
|
||||||||||||||| || ||| ||||| |||| |||||| |||||| | ||||||||||||||||||| |
|
|
| T |
28656813 |
tctacgttttaggtagacaacatatgtagggtctagcgttgggtccactatagggtatagtctgtggacca |
28656743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University