View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_high_22 (Length: 272)
Name: NF14957_high_22
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 13003455 - 13003683
Alignment:
| Q |
30 |
atatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaa-aacaaaagttttgttagtcata |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13003455 |
atatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcata |
13003554 |
T |
|
| Q |
129 |
tagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaacca |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13003555 |
tagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaacca |
13003654 |
T |
|
| Q |
229 |
atcaaattgcacatttaatgattcctttg |
257 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
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|
| T |
13003655 |
atcaaattgcacatctaatgattcctttg |
13003683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 31252131 - 31251903
Alignment:
| Q |
30 |
atatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaa-caaaagttttgttagtcata |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31252131 |
atatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcata |
31252032 |
T |
|
| Q |
129 |
tagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaacca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
31252031 |
tagatgataaaccatttatatcacacaaaaataacatgtaaggatttaggacaaaaccttctttacttttacataagtcgggttttagcttcttaaacca |
31251932 |
T |
|
| Q |
229 |
atcaaattgcacatttaatgattcctttg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31251931 |
atcaaattgcacatttaatgattcctttg |
31251903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 31094249 - 31094472
Alignment:
| Q |
30 |
atatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataa----aaaacaaaagttttgttagtc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| || |||| |||||||||||||||| |
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| T |
31094249 |
atatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacattctgtgaactcacaagaagaaaaaaaaagttttgttagtc |
31094348 |
T |
|
| Q |
126 |
atatagatgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaa |
225 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| || |||||||||||||| ||| |
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|
| T |
31094349 |
atattgatgataaatcatttatatcacacaaaaataacaagcaaggagttaggacaaaaccttctttgtttttacacaataagggttttagcttcttaaa |
31094448 |
T |
|
| Q |
226 |
ccaatcaaattgcacatttaatga |
249 |
Q |
| |
|
|||||||||||||||| ||||||| |
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|
| T |
31094449 |
ccaatcaaattgcacaattaatga |
31094472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 27206191 - 27205984
Alignment:
| Q |
33 |
tcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactcataa-aaaacaaaagttttgttagtcatatag |
131 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| || |
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|
| T |
27206191 |
tcatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtac |
27206092 |
T |
|
| Q |
132 |
atgataaaccatttatatcacacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatc |
231 |
Q |
| |
|
| || |||| |||||| ||| ||||||||| ||||| ||| ||||||||||||||||||| ||||||| | |||||| ||||||| ||||||||| |
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|
| T |
27206091 |
acgaaaaacaatttatttcaaacaaaaatagtatgcagggagttaggacaaaaccttctttagttttacacgatgagggtttaagcttcttaaaccaatc |
27205992 |
T |
|
| Q |
232 |
aaattgca |
239 |
Q |
| |
|
|||||||| |
|
|
| T |
27205991 |
aaattgca |
27205984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 16162850 - 16162748
Alignment:
| Q |
32 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacattctgtgaactc--ataaaaaacaaaagttttgttagtcatat |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| ||||| | || | |||||| |||||||||||||||||||| |
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|
| T |
16162850 |
atcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacactctgttatttcaaaaaaaaaaaaaaagttttgttagtcatat |
16162751 |
T |
|
| Q |
130 |
aga |
132 |
Q |
| |
|
||| |
|
|
| T |
16162750 |
aga |
16162748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25658257 - 25658207
Alignment:
| Q |
32 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
82 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25658257 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25658207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25664662 - 25664612
Alignment:
| Q |
32 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
82 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
25664662 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25664612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25671067 - 25671017
Alignment:
| Q |
32 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
82 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25671067 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25671017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25677472 - 25677422
Alignment:
| Q |
32 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
82 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25677472 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25677422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25684146 - 25684096
Alignment:
| Q |
32 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
82 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25684146 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25684096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 27228810 - 27228714
Alignment:
| Q |
153 |
acaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttctaaaaccaatcaaattgcacatttaatga |
249 |
Q |
| |
|
|||||||||| | ||||| | ||| |||||||||||||| |||||||| || ||||||| |||| |||||| |||||||||||||||||||| |
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|
| T |
27228810 |
acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatga |
27228714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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