View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14957_high_26 (Length: 255)

Name: NF14957_high_26
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14957_high_26
NF14957_high_26
[»] chr5 (24 HSPs)
chr5 (17-245)||(31494129-31494357)
chr5 (88-245)||(31407419-31407576)
chr5 (88-245)||(31416552-31416709)
chr5 (107-245)||(31475947-31476085)
chr5 (116-245)||(40843329-40843458)
chr5 (158-236)||(31505911-31505989)
chr5 (130-241)||(31284687-31284798)
chr5 (130-235)||(31332169-31332274)
chr5 (130-236)||(31279500-31279606)
chr5 (132-236)||(31281405-31281509)
chr5 (138-236)||(31643895-31643993)
chr5 (130-235)||(31380954-31381059)
chr5 (180-236)||(31463034-31463090)
chr5 (153-245)||(31387806-31387898)
chr5 (138-225)||(31395737-31395824)
chr5 (130-236)||(31288456-31288562)
chr5 (130-244)||(31378676-31378790)
chr5 (138-232)||(31390848-31390942)
chr5 (169-239)||(31464975-31465045)
chr5 (130-235)||(31317328-31317433)
chr5 (160-245)||(31329924-31330009)
chr5 (130-235)||(31368542-31368647)
chr5 (138-245)||(31483655-31483762)
chr5 (175-244)||(31460371-31460440)
[»] chr3 (1 HSPs)
chr3 (117-205)||(25708394-25708482)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 31494357 - 31494129
Alignment:
Q  17 atttttaaagtagaaaatagaaactactattaataattcttatttttaaatattcttgttgtatcattcattgatacccatgatcatccgaattcggatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31494357 atttttaaagtagaaaatagaaactactattaataattcttatttttaaatattcttgttgtatcattcattgatacccatgatcatccgaattcggatg 31494258  T
Q  117 tggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31494257 tggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgttcaaccatctatttg 31494158  T
Q  217 gaaattggaatttgttgaaggtaattctt 245  Q
    |||||||||||||||||||||||||||||    
T  31494157 gaaattggaatttgttgaaggtaattctt 31494129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 88 - 245
Target Start/End: Complemental strand, 31407576 - 31407419
Alignment:
Q  88 tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc 187  Q
    |||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||  |||||| |||||||| | |||||||||| ||||||||    
T  31407576 tgatacccgtgatcatccgaattcggatgtgcctgttgcagacaaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgttatgc 31407477  T
Q  188 tctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattctt 245  Q
    ||| ||| |||| || ||||||||||||||||||||||||||||||||| || |||||    
T  31407476 tctcagcacttccttcaaccatctatttggaaattggaatttgttgaagatatttctt 31407419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 245
Target Start/End: Complemental strand, 31416709 - 31416552
Alignment:
Q  88 tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc 187  Q
    |||||||  ||||||||| |||||||   ||||||||| |  |||||||||||||||||||  |||||||||| |||| | ||||| || ||||||||||    
T  31416709 tgataccgctgatcatccaaattcggtgttggctgttggaaacaaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgttatgc 31416610  T
Q  188 tctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattctt 245  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  31416609 tctaagctcttctttcaaccatctatttggaaattggaatttgttgaaggtaattctt 31416552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 31476085 - 31475947
Alignment:
Q  107 aattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaac 206  Q
    ||||| || ||||||| || || |||| || |||||||||||  |||||| |||||||| | ||||| ||||||||||||||||||||||||| ||||||    
T  31476085 aattcagaggtggctgatgcagacaaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaac 31475986  T
Q  207 catctatttggaaattggaatttgttgaaggtaattctt 245  Q
     ||||||||||||| ||||||||||||||| ||||||||    
T  31475985 tatctatttggaaactggaatttgttgaagataattctt 31475947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 40843458 - 40843329
Alignment:
Q  116 gtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctattt 215  Q
    |||||||||| || |||| || |||||||||||  | |||| |||||||| | ||||| || |||||||||||||||||||||| || ||| ||||||||    
T  40843458 gtggctgttgcagacaaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctattt 40843359  T
Q  216 ggaaattggaatttgttgaaggtaattctt 245  Q
    ||||||||||||||||||||| ||||||||    
T  40843358 ggaaattggaatttgttgaagataattctt 40843329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 31505989 - 31505911
Alignment:
Q  158 ttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 236  Q
    |||||||||| |||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||| |||||||    
T  31505989 ttcagctgttgttggattgctttgttatgctctcagttcttcctttatccatctatttggaaattggaattggttgaag 31505911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 31284687 - 31284798
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||||||||||||||||||  |||||| |||| ||| ||||||| ||||||||||||||||||||||||| || ||| |||| |||||| | |||||| |    
T  31284687 caaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatct 31284786  T
Q  230 gttgaaggtaat 241  Q
    | ||||| ||||    
T  31284787 gctgaagataat 31284798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 31332169 - 31332274
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| |||||||||| || ||| | || |||||| | ||||||||    
T  31332169 caaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaattt 31332268  T
Q  230 gttgaa 235  Q
    ||||||    
T  31332269 gttgaa 31332274  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 31279606 - 31279500
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||||||||||||||||||  |||||| ||||| |||| ||||| || ||||||||||||| |||||||| || ||| |||| |||||| | ||||||||    
T  31279606 caaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaattt 31279507  T
Q  230 gttgaag 236  Q
     ||||||    
T  31279506 cttgaag 31279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 31281405 - 31281509
Alignment:
Q  132 aaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgt 231  Q
    |||||||| || |||||  |||||| |||||||||| ||||| | |||||||||||| |||||||||| || ||  |||| |||||| ||||||||||||    
T  31281405 aaagtgtgcaggtttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgt 31281504  T
Q  232 tgaag 236  Q
    |||||    
T  31281505 tgaag 31281509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 31643993 - 31643895
Alignment:
Q  138 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 236  Q
    |||||||||||  |||||| |||| || || ||||| | |||||||||||||| |||||||| || ||| ||||||||||| |||||||| ||||||||    
T  31643993 tggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaag 31643895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 31380954 - 31381059
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| | |||||||| || ||  | || |||||| | ||||||||    
T  31380954 caaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaattt 31381053  T
Q  230 gttgaa 235  Q
    ||||||    
T  31381054 gttgaa 31381059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 31463090 - 31463034
Alignment:
Q  180 tgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag 236  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  31463090 tgttatgctgtaagctcttccttcaaccatctatttggaaattggaacttgttgaag 31463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 31387898 - 31387806
Alignment:
Q  153 tttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattctt 245  Q
    ||||||||| ||||| ||||| |||||||||||||||| |||||||| || |  ||||||||||| || ||||| || || |||||| |||||    
T  31387898 tttgtttcatctgttgttggactgctttgttatgctcttagctcttccttcactcatctatttgggaactggaacttttttaaggtatttctt 31387806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 31395737 - 31395824
Alignment:
Q  138 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattgga 225  Q
    |||||||||||| | | || |||||||||| ||||| |  ||||||||||||| |||||||| || || |||||||||||||| ||||    
T  31395737 tggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttccttcaatcatctatttggaaactgga 31395824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 31288456 - 31288562
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||||||||||||||||||  |||||| |||||||||| ||||| |||| | ||||| |||| ||||||| || ||  |||| | |||| | |||||| |    
T  31288456 caaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaatct 31288555  T
Q  230 gttgaag 236  Q
    |||||||    
T  31288556 gttgaag 31288562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 31378676 - 31378790
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||| |||||||||||| |  | |||| | |||||||| ||||| |||||||  ||||||| || ||||| || ||| |||| |||||| ||||||||||    
T  31378676 caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt 31378775  T
Q  230 gttgaaggtaattct 244  Q
    ||| ||| |||||||    
T  31378776 gttcaagataattct 31378790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 31390942 - 31390848
Alignment:
Q  138 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgtt 232  Q
    ||||||||||| || |||   ||| || ||||||| || || |||||||||||||| ||||| || ||||||||||||||||| ||||| |||||    
T  31390942 tggagatttgtgagttttacatcatcttttattggcttcctctgttatgctctaagttcttccttcaaccatctatttggaaactggaacttgtt 31390848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 31465045 - 31464975
Alignment:
Q  169 ttggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggta 239  Q
    ||||| |||| ||||| ||||||||| |||| || || |||||||||||||| |||||||| |||||||||    
T  31465045 ttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggta 31464975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 31317328 - 31317433
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||| ||||||||||||||  |||||| |||| || || ||||| |  |||| |||||  |||||||||| |||||| |||| |||||| | ||||||||    
T  31317328 caaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaattt 31317427  T
Q  230 gttgaa 235  Q
    ||||||    
T  31317428 gttgaa 31317433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 31329924 - 31330009
Alignment:
Q  160 cagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattctt 245  Q
    |||||||| ||||| |||||||  ||||||| || ||||| || ||| |||| |||||| ||||||||||||| ||| ||||||||    
T  31329924 cagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctt 31330009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 31368542 - 31368647
Alignment:
Q  130 caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt 229  Q
    |||| ||||||||||||||  |||||| |||| || || ||||| |  |||| |||||| |||||||||| |||||| |||| |||||| | || |||||    
T  31368542 caaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaattt 31368641  T
Q  230 gttgaa 235  Q
    ||||||    
T  31368642 gttgaa 31368647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 31483655 - 31483762
Alignment:
Q  138 tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaagg 237  Q
    |||||||||||  | ||||||||| |  |||||||| | || | ||| |||||||||||||| || || ||| ||| |||||| |||| ||||||||||     
T  31483655 tggagatttgtgtgttttgtttcatccattattggactactcttttacgctctaagctcttccttcaatcatatatgtggaaagtggagtttgttgaaga 31483754  T
Q  238 taattctt 245  Q
    ||||||||    
T  31483755 taattctt 31483762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 31460440 - 31460371
Alignment:
Q  175 tgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattct 244  Q
    |||||||||||||||| |||||||| || || ||||||||||| || ||||| || || |||||| ||||    
T  31460440 tgctttgttatgctcttagctcttccttcaatcatctatttgggaactggaacttttttaaggtacttct 31460371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 25708394 - 25708482
Alignment:
Q  117 tggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaa 205  Q
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T  25708394 tggctgatgcaggaaaaagtatggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaa 25708482  T

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