View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14957_high_3 (Length: 593)

Name: NF14957_high_3
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14957_high_3
NF14957_high_3
[»] chr8 (3 HSPs)
chr8 (62-380)||(33116396-33116712)
chr8 (393-582)||(33116769-33116958)
chr8 (8-64)||(33116313-33116369)
[»] chr3 (3 HSPs)
chr3 (457-549)||(6302521-6302613)
chr3 (457-549)||(2146118-2146210)
chr3 (486-579)||(7912000-7912093)
[»] chr5 (1 HSPs)
chr5 (464-571)||(25410767-25410874)
[»] chr2 (1 HSPs)
chr2 (470-523)||(43453163-43453216)
[»] chr4 (1 HSPs)
chr4 (530-578)||(26209215-26209263)
[»] chr1 (1 HSPs)
chr1 (457-523)||(42624006-42624072)
[»] chr7 (1 HSPs)
chr7 (458-546)||(20290691-20290779)


Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 62 - 380
Target Start/End: Original strand, 33116396 - 33116712
Alignment:
Q  62 ctcataggagtattacacatgttgcctagcctcatcaaattgtcaaagcataattacaaactcttaattcgttctaaataaatttcgttgaataaaaaac 161  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33116396 ctcataggagtattacacatgttgcctagcctcattaaattgtcaaagcataattacaaactcttaattcgttctaaataaatttcgttgaataaaaaac 33116495  T
Q  162 ttaagaaaagttaaattaatagtggtattaaatttgattcaagcaaagactaagctcaatcaactccaacacattttttgcaagtatttggtggtcatgg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33116496 ttaagaaaagttaaattaatagtggtattaaatttgattcaagcaaagactaagctcaatcaactccaacacattttttgcaagtatttggtggtcatgg 33116595  T
Q  262 cgcaaccataactcttattgcttctccaacgtagctatcccttgttattgcaatataaaaataaatccaaaatagcatcattctcaatgtattgatgcta 361  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  33116596 cgcaaccgtaactcttattgcttctccaacgtagctatcccttgttattgcaatataaaaataaatccaaaatagcatcattctcaatg--ttgatgcta 33116693  T
Q  362 gctaccttggcgaccccat 380  Q
    |||||||||||||||||||    
T  33116694 gctaccttggcgaccccat 33116712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 393 - 582
Target Start/End: Original strand, 33116769 - 33116958
Alignment:
Q  393 cacaggattctttggtttcatgtaaccatattagcattttccatcatttcagcatgtttgttttatgtaacgagtcaaagagttgaaaaggacaatatag 492  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33116769 cacaggattctttggtttcatgtaacaatattagcattttccaacatttcagcatgtttgttttatgtaacgagtcaaagagttgaaaaggacaatatag 33116868  T
Q  493 gaaatatgaatgtaaactcttataaacaagataaggtcaaacaaataagacatgaaatatttatgatgtaactgctctttctctctccct 582  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  33116869 gaaatatgaatgtgaactcttataaacaagataaggtcaaagaaataagacatgaaatatgtacgatgtaactgctctttctctctccct 33116958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 33116313 - 33116369
Alignment:
Q  8 gcatggttctctgttccggttcagacaagagggaaacactgtattaataagtgtctc 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33116313 gcatggttctctgttccggttcagacaagagggaaacactgtattaataagtgtctc 33116369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 549
Target Start/End: Original strand, 6302521 - 6302613
Alignment:
Q  457 atgtaacgagtcaaagagttgaaaaggacaatataggaaatatgaatgtaaactcttataaacaagataaggtcaaacaaataagacatgaaa 549  Q
    |||||| ||||||||||| | |||||| |||||||| |||||||||||| |||||||||||| |||| |||  |||  |||||||||||||||    
T  6302521 atgtaatgagtcaaagagcttaaaagggcaatatagaaaatatgaatgtgaactcttataaataagagaagaccaagaaaataagacatgaaa 6302613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 549
Target Start/End: Original strand, 2146118 - 2146210
Alignment:
Q  457 atgtaacgagtcaaagagttgaaaaggacaatataggaaatatgaatgtaaactcttataaacaagataaggtcaaacaaataagacatgaaa 549  Q
    |||||| ||||||||||||| ||| |  ||||||  ||||||||||||| ||| |||||||| |||||||||  ||  |||||| ||||||||    
T  2146118 atgtaatgagtcaaagagtttaaaggagcaatatttgaaatatgaatgtgaacgcttataaataagataaggcaaaggaaataaaacatgaaa 2146210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 579
Target Start/End: Complemental strand, 7912093 - 7912000
Alignment:
Q  486 aatataggaaatatgaatgtaaactcttataaacaagataaggtcaaacaaataagacatgaaatatttatgatgtaactgctctttctctctc 579  Q
    ||||||||||||| ||||||  ||  ||||||| |||| ||||| ||  ||||||| |||||||||  | |||||||||| || ||||||||||    
T  7912093 aatataggaaataggaatgtggaccattataaaaaagagaaggttaaggaaataaggcatgaaatacgtgtgatgtaacttctgtttctctctc 7912000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 464 - 571
Target Start/End: Complemental strand, 25410874 - 25410767
Alignment:
Q  464 gagtcaaagagttgaaaaggacaatataggaaatatgaatgtaaactcttataaacaagataaggtcaaacaaataagacatgaaatatttatgatgtaa 563  Q
    |||| |||||| |||||||||||||| |||||||| ||||||| |  |||||||| |||| ||| ||||  |||||| ||||||||||| | ||||||||    
T  25410874 gagttaaagagatgaaaaggacaatagaggaaataggaatgtagatccttataaataagagaagatcaaggaaataaaacatgaaatatgtgtgatgtaa 25410775  T
Q  564 ctgctctt 571  Q
    || |||||    
T  25410774 cttctctt 25410767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 523
Target Start/End: Complemental strand, 43453216 - 43453163
Alignment:
Q  470 aagagttgaaaaggacaatataggaaatatgaatgtaaactcttataaacaaga 523  Q
    ||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||    
T  43453216 aagagttaaaaaggacaatataggaaatgtgaatgtgaactcttataaataaga 43453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 578
Target Start/End: Original strand, 26209215 - 26209263
Alignment:
Q  530 caaacaaataagacatgaaatatttatgatgtaactgctctttctctct 578  Q
    |||| |||||||||||||||||| | |||||||||| ||||||||||||    
T  26209215 caaagaaataagacatgaaatatgtgtgatgtaacttctctttctctct 26209263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 523
Target Start/End: Original strand, 42624006 - 42624072
Alignment:
Q  457 atgtaacgagtcaaagagttgaaaaggacaatataggaaatatgaatgtaaactcttataaacaaga 523  Q
    |||||| ||||||||||||||||| |  || |||||||||| |||||||  ||||||||||| ||||    
T  42624006 atgtaatgagtcaaagagttgaaaggagcattataggaaatgtgaatgtggactcttataaataaga 42624072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 546
Target Start/End: Complemental strand, 20290779 - 20290691
Alignment:
Q  458 tgtaacgagtcaaagagttgaaaaggacaatataggaaatatgaatgtaaactcttataaacaagataaggtcaaacaaataagacatg 546  Q
    ||||| ||||||||| | ||||||||| ||||| | |||||||||| |  || |||||||| |||| || | ||| |||||||||||||    
T  20290779 tgtaatgagtcaaagggctgaaaaggataatatggtaaatatgaatatggacccttataaataagagaaagccaagcaaataagacatg 20290691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University