View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14957_high_6 (Length: 444)

Name: NF14957_high_6
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14957_high_6
NF14957_high_6
[»] scaffold0060 (2 HSPs)
scaffold0060 (56-284)||(76089-76315)
scaffold0060 (344-392)||(76023-76071)
[»] scaffold0019 (2 HSPs)
scaffold0019 (40-229)||(164838-165027)
scaffold0019 (257-328)||(164753-164824)
[»] chr7 (4 HSPs)
chr7 (240-428)||(8434327-8434509)
chr7 (52-166)||(8434214-8434326)
chr7 (164-220)||(8431246-8431302)
chr7 (292-324)||(8432943-8432975)
[»] chr4 (4 HSPs)
chr4 (257-325)||(55778333-55778401)
chr4 (257-325)||(55842513-55842581)
chr4 (42-79)||(55778945-55778982)
chr4 (42-79)||(55843125-55843162)
[»] chr2 (2 HSPs)
chr2 (257-328)||(28046771-28046842)
chr2 (42-79)||(28047386-28047423)


Alignment Details
Target: scaffold0060 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 56 - 284
Target Start/End: Complemental strand, 76315 - 76089
Alignment:
Q  56 taatgaataataagaagcattggttctaataaacccatgatgattactgaactcacatctctctctatagaagaaacctggtaagcaattttcagaccat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76315 taatgaataataagaagcattggttctaataaacccatgatgattactgaactcacatctctctctatagaagaaacctggtaagcaattttcagaccat 76216  T
Q  156 aatgaactaagcaagtatcatactctccaatctttacatttcatgaaaatcctttcacacattttttcatacaatttctgggcctgtggattttttaagg 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || ||||| ||||||| ||||||||||||||||| ||| ||||    
T  76215 aatgaactaagcaagtataatactctccaatctttacatttcatgaaaatccttt--catattttgtcatacagtttctgggcctgtggatgtttgaagg 76118  T
Q  256 catttcactaaaagcaagagcataacagc 284  Q
    |||||||||||||||||||||||||||||    
T  76117 catttcactaaaagcaagagcataacagc 76089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 76071 - 76023
Alignment:
Q  344 ccttcatgtgtgttagaagaagaagcatgaaattgatccacattaacat 392  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  76071 ccttcatgtgtgtgggaagaagaagcatgaaattgatccacattaacat 76023  T

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Target: scaffold0019 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 165027 - 164838
Alignment:
Q  40 taacaacatattttagtaatgaataataagaagcattggttctaataaacccatgatgattactgaactcacatctctctctatagaagaaacctggtaa 139  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  165027 taacaacatattttagtaatgaatactaagatgcattggttctaataaacccatgacgattactgaactcacatctctctctatagaagaaaactggtaa 164928  T
Q  140 gcaattttcagaccataatgaactaagcaagtatcatactctccaatctttacatttcatgaaaatcctttcacacattttttcatacaa 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  164927 gcaattttcagacaataatgaactaagcaagtatcatactctccaatctttacatttcatgaagatcctttcacacattttgtcatacaa 164838  T

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Target: scaffold0019; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 164824 - 164753
Alignment:
Q  257 atttcactaaaagcaagagcataacagcgtagaaattggagttttaaaaaataacatttcaatgttcatcgt 328  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  164824 atttcaataaaagcaagagcataacagcacagaaattggagttttaaaaaataacatttcaatgttcatcgt 164753  T

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Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 240 - 428
Target Start/End: Original strand, 8434327 - 8434509
Alignment:
Q  240 tgtggattttttaaggcatttcactaaaagcaagagcataacagcgtagaaattggagttttaaaaaataacatttcaatgttcatcgtcatcaccatcc 339  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||      ||||||    
T  8434327 tgtggatttttgaaggcatttcactaaaagcaagagcataacaacacagaaattggagttttaaaaaataacatttcaatgttcatcg------ccatcc 8434420  T
Q  340 caacccttcatgtgtgttagaagaagaagcatgaaattgatccacattaacatagactccagaaattaagagtacaagaagttataaag 428  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8434421 caacccttcatgtgtgtgagaagaagaagcatgaaattgatccacgttaacatagactccagaaattaagagtacaagaagttataaag 8434509  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 8434214 - 8434326
Alignment:
Q  52 ttagtaatgaataataagaagcattggttctaataaacccatgatgattactgaactcacatctctctctatagaagaaacctggtaagcaattttcaga 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| |||    
T  8434214 ttagtaatgaataataagaagcattggttctaataaacccatgatgattactgaactcgca--tctctctatagaagaaacctggtaagcaattttgaga 8434311  T
Q  152 ccataatgaactaag 166  Q
    |||||||||||||||    
T  8434312 ccataatgaactaag 8434326  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 8431246 - 8431302
Alignment:
Q  164 aagcaagtatcatactctccaatctttacatttcatgaaaatcctttcacacatttt 220  Q
    |||||||||||||||||||||||||||||||  ||||| | ||| ||||||||||||    
T  8431246 aagcaagtatcatactctccaatctttacataccatgacactccattcacacatttt 8431302  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 324
Target Start/End: Original strand, 8432943 - 8432975
Alignment:
Q  292 ttggagttttaaaaaataacatttcaatgttca 324  Q
    |||||||||||||||||||||||||||||||||    
T  8432943 ttggagttttaaaaaataacatttcaatgttca 8432975  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 55778401 - 55778333
Alignment:
Q  257 atttcactaaaagcaagagcataacagcgtagaaattggagttttaaaaaataacatttcaatgttcat 325  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  55778401 atttcactaaaagcaagagcataacagcacagaaattggagttttaaaaaataacatttcaatgttcat 55778333  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 55842581 - 55842513
Alignment:
Q  257 atttcactaaaagcaagagcataacagcgtagaaattggagttttaaaaaataacatttcaatgttcat 325  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  55842581 atttcactaaaagcaagagcataacagcacagaaattggagttttaaaaaataacatttcaatgttcat 55842513  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 55778982 - 55778945
Alignment:
Q  42 acaacatattttagtaatgaataataagaagcattggt 79  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55778982 acaacatattttagtaatgaataataagaagcattggt 55778945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 55843162 - 55843125
Alignment:
Q  42 acaacatattttagtaatgaataataagaagcattggt 79  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  55843162 acaacatattttactaatgaataataagaagcattggt 55843125  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 28046842 - 28046771
Alignment:
Q  257 atttcactaaaagcaagagcataacagcgtagaaattggagttttaaaaaataacatttcaatgttcatcgt 328  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  28046842 atttcactaaaagcaagagcataacaacacagaaattggagttttaaaaaataacatttcaatgttcatcgt 28046771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 28047423 - 28047386
Alignment:
Q  42 acaacatattttagtaatgaataataagaagcattggt 79  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28047423 acaacatattttagtaatgaataataagaagcattggt 28047386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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