View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14957_low_11 (Length: 373)

Name: NF14957_low_11
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14957_low_11
NF14957_low_11
[»] chr3 (8 HSPs)
chr3 (19-366)||(31825683-31826030)
chr3 (19-205)||(24923586-24923772)
chr3 (19-220)||(24981901-24982102)
chr3 (19-307)||(25084799-25085094)
chr3 (19-205)||(24497385-24497571)
chr3 (26-289)||(21584730-21584989)
chr3 (19-199)||(24920012-24920192)
chr3 (318-360)||(24923889-24923931)
[»] chr7 (4 HSPs)
chr7 (23-198)||(10575264-10575439)
chr7 (35-198)||(39954987-39955150)
chr7 (33-102)||(10580760-10580829)
chr7 (47-163)||(354316-354432)
[»] chr8 (1 HSPs)
chr8 (32-201)||(14261171-14261340)
[»] chr4 (1 HSPs)
chr4 (32-177)||(53328612-53328757)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 31825683 - 31826030
Alignment:
Q  19 caagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825683 caagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 31825782  T
Q  119 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31825783 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattggaga 31825882  T
Q  219 aacgaagaagatttgagaaatttgggaaattagggtttggttttgacttggagtgggaaagagagaaggggatctgagtatttatgaattggtgggagcg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31825883 aacgaagaagatttgagaaatttgggaaattagggtttggttttgaatcggagtgggaaagagagaaggggatctgagtatttatgaatgggtgggagcg 31825982  T
Q  319 tgagagcgggatgaataagagggaactgaattttgtgttttcatctca 366  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31825983 tgagagcgggatgaataagagggaactgaattttgtgttttgatctca 31826030  T

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Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 24923586 - 24923772
Alignment:
Q  19 caagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  24923586 caagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatg 24923685  T
Q  119 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagaga 205  Q
    || || || ||||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  24923686 ttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacattttcaagaga 24923772  T

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Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 24982102 - 24981901
Alignment:
Q  19 caagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 118  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  24982102 caagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatg 24982003  T
Q  119 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgaga 218  Q
    || || || |||||||| || ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||||||||    
T  24982002 ttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccacgccctgacattttcaaaagatgaaaattcgaga 24981903  T
Q  219 aa 220  Q
    ||    
T  24981902 aa 24981901  T

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Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 25085094 - 25084799
Alignment:
Q  19 caagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 118  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25085094 caagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatg 25084995  T
Q  119 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgag- 217  Q
    || || || ||||| ||||| ||||| ||||||||||||||||| |  |||||||||||||| ||||||||||||||||||  ||   ||||||| |||     
T  25084994 ttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgacattttcgcga---gaaaatttgaga 25084898  T
Q  218 aaacg--aagaagatttgagaaatttgggaaattaggg-tttggttttgacttg------gagtgggaaagagagaaggggatctgagtatttatgaat 307  Q
    |||||  ||||| ||| | |||||| | |||||||||| ||||  ||||| |||      |||||||||||||||||  ||||||||||||||||||||    
T  25084897 aaacgaaaagaaaattagggaaattagagaaattagggttttgaatttgaattgaattgtgagtgggaaagagagaaacggatctgagtatttatgaat 25084799  T

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Target: chr3; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 24497385 - 24497571
Alignment:
Q  19 caagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 118  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  24497385 caagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatg 24497484  T
Q  119 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagaga 205  Q
    ||||| || ||||| || || ||||| ||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  24497485 ttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgacattttcaagaga 24497571  T

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Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 21584730 - 21584989
Alignment:
Q  26 cctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgc 125  Q
    ||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||| || |    
T  21584730 cctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcac 21584829  T
Q  126 ggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgagaaacgaag 225  Q
    | |||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||   ||||||| |||||||  ||    
T  21584830 gaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacattttcaaga---gaaaatttgagaaacagag 21584926  T
Q  226 aagatttgagaaatttgggaaattagggtttggttttgacttggagtgggaaagagagaagggg 289  Q
    || | ||| |||||||||| ||||||||||| |  |||  || |||||||||| ||||||||||    
T  21584927 aa-aattgggaaatttggggaattagggttttgaattggatttgagtgggaaacagagaagggg 21584989  T

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Target: chr3; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 24920012 - 24920192
Alignment:
Q  19 caagacacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatg 118  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  24920012 caagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatg 24920111  T
Q  119 ttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttc 199  Q
    || || || |||||||| || ||||| ||||||||||||||||| |  |||||||||||||| ||||| || |||||||||    
T  24920112 ttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccacggccagacattttc 24920192  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 24923889 - 24923931
Alignment:
Q  318 gtgagagcgggatgaataagagggaactgaattttgtgttttc 360  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||    
T  24923889 gtgagagcgggaggaagaagagggaactcaattttgtgttttc 24923931  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 10575439 - 10575264
Alignment:
Q  23 acacctctggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgt 122  Q
    |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||||||||    
T  10575439 acacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgt 10575340  T
Q  123 cgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacatttt 198  Q
    | |||||||| || |  || || |||||||| ||||||||||  || ||||||||||| |||||||| ||||||||    
T  10575339 cacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccacgaccagacatttt 10575264  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 39954987 - 39955150
Alignment:
Q  35 tcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaactt 134  Q
    ||||| ||||| | ||| ||||| |||||||||||||| |  || || |  |||||||| |||||||| || || || |||||||||||||| ||||| |    
T  39954987 tcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacct 39955086  T
Q  135 ttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacatttt 198  Q
    |||||||||| ||||| ||||||||||| |  ||||| ||||| || |||||||||||||||||    
T  39955087 ttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 10580829 - 10580760
Alignment:
Q  33 tttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 102  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||    
T  10580829 tttcctcatagatcaaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctt 10580760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 354432 - 354316
Alignment:
Q  47 aaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgccttt 146  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || ||||| || || || || |||||  |||  ||||| || || || |  |    
T  354432 aaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcact 354333  T
Q  147 ttgcacctccctttcct 163  Q
    |||||||||||||||||    
T  354332 ttgcacctccctttcct 354316  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 14261171 - 14261340
Alignment:
Q  32 gtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaa 131  Q
    ||||||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| || ||||||||||| || || |    
T  14261171 gtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagca 14261270  T
Q  132 cttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaa 201  Q
    |||| |  || || |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  14261271 ctttgcgatgtctctttgcacctccctttcctaatcccttacctccctttccacgacctgacattttcaa 14261340  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 53328757 - 53328612
Alignment:
Q  32 gtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaa 131  Q
    |||||||||||||| || |||||||| | |||||||||||| | ||| || |  |||||||| |||||||| ||||| ||||||||||| ||||| ||||    
T  53328757 gtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaa 53328658  T
Q  132 cttttctgtgcctttttgcacctccctttcctagccccttacctcc 177  Q
    | || | ||| | ||| || || ||||||||||  ||||| |||||    
T  53328657 ccttacggtgtcgtttcgctccaccctttcctaaaccctttcctcc 53328612  T

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