View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_25 (Length: 274)
Name: NF14957_low_25
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 10968646 - 10968900
Alignment:
| Q |
1 |
aggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaatt |
100 |
Q |
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| T |
10968646 |
aggtgattttggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaatt |
10968745 |
T |
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| Q |
101 |
aatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgct |
200 |
Q |
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| T |
10968746 |
aatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgct |
10968845 |
T |
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| Q |
201 |
ttgaataatctggcacagttgtggaagcagaagaagcaacctagtatggcgaatt |
255 |
Q |
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| T |
10968846 |
ttgaataatctggcacagttgtggaagcagaagaagcaacctagtatggcgaatt |
10968900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10982596 - 10982827
Alignment:
| Q |
1 |
aggtgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaatt |
100 |
Q |
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| T |
10982596 |
aggtgattttggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcaaattaaggaatt |
10982695 |
T |
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| Q |
101 |
aatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgct |
200 |
Q |
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| T |
10982696 |
aatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcccttgtcgct |
10982795 |
T |
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| Q |
201 |
ttgaataatctggcacagttgtggaagcagaa |
232 |
Q |
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| T |
10982796 |
ttgaataagttggctcagttgtggaagcagaa |
10982827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 11002829 - 11003030
Alignment:
| Q |
4 |
tgattttggttgaggagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaat |
103 |
Q |
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| T |
11002829 |
tgattttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaaggagttgat |
11002928 |
T |
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| Q |
104 |
ggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttg |
203 |
Q |
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| T |
11002929 |
ggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttg |
11003028 |
T |
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| Q |
204 |
aa |
205 |
Q |
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|| |
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| T |
11003029 |
aa |
11003030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 11079996 - 11080171
Alignment:
| Q |
30 |
gctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagatta |
129 |
Q |
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||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || || || ||||||||| ||| |
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| T |
11079996 |
gctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggtta |
11080095 |
T |
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| Q |
130 |
ggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
205 |
Q |
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| T |
11080096 |
gagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaa |
11080171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 11019344 - 11019411
Alignment:
| Q |
138 |
attttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
205 |
Q |
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| T |
11019344 |
attttgaaaatgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaa |
11019411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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