View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_26 (Length: 273)
Name: NF14957_low_26
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 40519949 - 40520188
Alignment:
| Q |
17 |
acatggaagcttcataatacaactttgttgcatccccttaactcccaagtcgtcataaatatctgaaagcactgctccataagctgtttctagtgaattt |
116 |
Q |
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| T |
40519949 |
acatggaagcttcataatacaactttgttgcatccccttaactcccaagtcgtcataaatatctgaaagcactgctccataagctgtttctagtgaattt |
40520048 |
T |
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| Q |
117 |
atctgaaaatatgtgttatacaaaatgtaaactaaaattttgattctaataaattaatttcacatttagtaagctttttattgattaatacttacataaa |
216 |
Q |
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| T |
40520049 |
atctgaaaatatgtgttatacaaaatgtaaactaaaattttgattctaataaattaatttcacatttagtaagctttttattgattaatacttacataaa |
40520148 |
T |
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| Q |
217 |
acaaataagcttgtgcaacagttggacatatccattccat |
256 |
Q |
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| T |
40520149 |
acaaataagcttgtgcaacagttggacatatccattccat |
40520188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 40510957 - 40511061
Alignment:
| Q |
19 |
atggaagcttcataatacaactttgttgcatccccttaactcccaagtcgtcataaatatctgaaagcactgctccataagctgtttctagtgaatttat |
118 |
Q |
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| T |
40510957 |
atggaagcttcataatacaactatgtggcatccctttaactcccatgttgtcatacatatctgaaagcactccttcataacctgtttctagtgaatttat |
40511056 |
T |
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| Q |
119 |
ctgaa |
123 |
Q |
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||||| |
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| T |
40511057 |
ctgaa |
40511061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 40511124 - 40511224
Alignment:
| Q |
158 |
gattctaataaattaatttcacatttagtaagctt----tttattgattaatacttacataaaacaaataagcttgtgcaacagttggacatatccattc |
253 |
Q |
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|||| |||||||||||||||||||| ||| | || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40511124 |
gattttaataaattaatttcacattaagtttggtttttatttatttattaatacttacataaaacaaataagcttctgcaacagttggacatatccattc |
40511223 |
T |
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| Q |
254 |
c |
254 |
Q |
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| T |
40511224 |
c |
40511224 |
T |
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