View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_30 (Length: 258)
Name: NF14957_low_30
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 40520210 - 40520462
Alignment:
| Q |
1 |
acttctcaacaacgcaacctgcaattccacaccaaaatttatcgaatgtaatcacatgtgtcagtgtcgaagcaatatacattcagtcaaatgtgtgaaa |
100 |
Q |
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| T |
40520210 |
acttctcaacaacgcaacctgcaattccacaccaaaatttatcgaatgtaatcacatgtgtcagtgtcgaagcaatatacattcagtcaaatgtgtgaaa |
40520309 |
T |
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| Q |
101 |
gctacataaataatcagtagtgagataattgttaccttggaaaatggctcagccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40520310 |
gctacataaataatcagtagtgagataattgttaccttggaaaatggctcagccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaa |
40520409 |
T |
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| Q |
201 |
ttgctccttttccagctccatcaagaaaaccagtttctgtggtctgacctttg |
253 |
Q |
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| T |
40520410 |
ttgctccttttccagctccatcaagaaaaccagtttctgtggtctgacctttg |
40520462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 40511570 - 40511701
Alignment:
| Q |
128 |
attgttaccttggaaaatggctca------gccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttccagctccat |
221 |
Q |
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| T |
40511570 |
attgttaccttggaaaatggctcacccacggccacataagcaaaactcataaattctatggctgcaatggctcctgcaatcgctcctttgccagctccat |
40511669 |
T |
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| Q |
222 |
caagaaaaccagtttctgtggtctgacctttg |
253 |
Q |
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| T |
40511670 |
caagaaaaccaacttctgtggtttgtcctttg |
40511701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40511248 - 40511284
Alignment:
| Q |
1 |
acttctcaacaacgcaacctgcaattccacaccaaaa |
37 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |
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| T |
40511248 |
acttctcaacaaagcaacctacaattccacaccaaaa |
40511284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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