View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_34 (Length: 247)
Name: NF14957_low_34
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 22322826 - 22322657
Alignment:
| Q |
1 |
ttattattttatttttctagaagtttaatttggtttgaagcactatatgttttaatattttctcatctttatgccacccatcaaaatcacttgaagttgc |
100 |
Q |
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| T |
22322826 |
ttattattttatttttgtagaagtttaatttggtttgaagcactatatattttaatattttcttatctttataccacccatcaaaatcacttgaagttgc |
22322727 |
T |
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| Q |
101 |
aattattgttatgcttaacttttacattgtgtaatcatatgatttttctcttgcaatttgattatgcctc |
170 |
Q |
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| T |
22322726 |
aattattgttatgcttaacttttacattgtgtaatcatatgatttatctcttgcaatttgattatgcctc |
22322657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 3125404 - 3125285
Alignment:
| Q |
109 |
ttatgcttaacttttacattgtgtaatcatatgatttttctcttgcaatttgattatgcctcctaatatttagatggcttcttgcagagaccaccaggtg |
208 |
Q |
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| T |
3125404 |
ttatgcttaacttttacattgtgtaatcatatgatctatctcttgcaatttgattatgcctcctaatatttagttggcttcttgctgagaccaccagatg |
3125305 |
T |
|
| Q |
209 |
gtgggtcaaatgactcaaac |
228 |
Q |
| |
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| T |
3125304 |
gtggatcaaatggctcaaac |
3125285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 3292224 - 3292378
Alignment:
| Q |
77 |
cccatcaaaatcacttgaagttgcaattat---tgttatgcttaacttttacattgtgtaatcatatgatttttctcttgcaatttgattatgcctccta |
173 |
Q |
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| T |
3292224 |
cccattaaaatcacttgaagttgtagttacatatgttatgctaaacttttgcattgggtaatcatatgatctatctcttgcaattttactatgcctccta |
3292323 |
T |
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| Q |
174 |
atatttagatggcttcttgcagagaccaccaggtggtgggtcaaatgactcaaac |
228 |
Q |
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| T |
3292324 |
atgtttagttgacttcttgaagagaccactaggtggtggatcaaatggctcaaac |
3292378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 3127951 - 3127780
Alignment:
| Q |
28 |
atttggtttgaagcactatatgttttaatattttctcatctttatgccacccatcaaaatcacttgaagttgcaatt--at-tgttatgcttaactttta |
124 |
Q |
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||||||||||||| | |||||||||| || || |||| ||| ||| || ||||| |||||||||| |||| | | || || ||||||||||||||||| |
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| T |
3127951 |
atttggtttgaagtaatatatgttttgatcttgtctcgtctctatacctcccattaaaatcactttaagtagtagttgcatatgttatgcttaacttttt |
3127852 |
T |
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| Q |
125 |
cattgtgtaatcatatgatttttctcttgcaatttgattatgcctcctaatatttagatggcttcttgcagagaccacc |
203 |
Q |
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| T |
3127851 |
cattatgtaatcatat-------ctctagcaatttgattaagcctcataatatttagttggcttcttgcagagaccacc |
3127780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 22321148 - 22321095
Alignment:
| Q |
175 |
tatttagatggcttcttgcagagaccaccaggtggtgggtcaaatgactcaaac |
228 |
Q |
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| T |
22321148 |
tatttagctggcttcttgcagagaccaccatgtggtgggtcaaatgactcaaac |
22321095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 2988419 - 2988625
Alignment:
| Q |
18 |
tagaagtttaatttgg-tttgaagcactatatgttttaatattttctcatctttatgccacccatcaaaatcacttgaagttgcaattat---tgttatg |
113 |
Q |
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| T |
2988419 |
tagaagtctaatttgactttgaagtactatacattttgatcttgtcttgtctttatacctcccatcaaaatctcttgaagttgtagttacatgtgttatt |
2988518 |
T |
|
| Q |
114 |
cttaacttttacattgtgtaatcatatgatttttctcttgcaatttgattatgcctcctaatatttagatggcttcttgcagagaccaccaggtggtggg |
213 |
Q |
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|||||||||| ||||||| |||||||||| || | |||| ||||| | |||||||| |||| || | |||||||||||||||| || || ||||||| |
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| T |
2988519 |
cttaacttttgcattgtggaatcatatgaattatatcttttaatttaagtatgcctcttaatgttcaattggcttcttgcagagagcatcaagtggtgga |
2988618 |
T |
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| Q |
214 |
tcaaatg |
220 |
Q |
| |
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||||||| |
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| T |
2988619 |
tcaaatg |
2988625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 38205970 - 38205866
Alignment:
| Q |
79 |
catcaaaatcacttgaagttgcaattat---tgttatgcttaacttttacattgtgtaatcatatgatttttctcttgcaatttgattatgcctcctaat |
175 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||| | ||||||||||||||||||||| | |||| |
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| T |
38205970 |
catcaaaatcacttgaagttgcaattacatatgttatgcttaacttatgcattgtaaaatcatatgaaatatctcttgcaatttgattatgcattttaat |
38205871 |
T |
|
| Q |
176 |
attta |
180 |
Q |
| |
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||||| |
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| T |
38205870 |
attta |
38205866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 38263019 - 38263086
Alignment:
| Q |
78 |
ccatcaaaatcacttgaagttgcaatta---ttgttatgcttaacttttacattgtgtaatcatatga |
142 |
Q |
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| T |
38263019 |
ccatcaaaatcacatgaagttgcaattacatatgttatgcttaacttttgcattgtagaatcatatga |
38263086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 12413843 - 12413737
Alignment:
| Q |
107 |
tgttatgcttaacttttacattgtgtaatcatatgatttttctcttgcaatttgattatgcctcctaatatttagatggcttcttgcagagaccaccagg |
206 |
Q |
| |
|
|||||| ||||||||| |||| || |||||||| | | ||||||||||||||||||||||||||||| |||| | ||||||| ||||| || |||| |
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| T |
12413843 |
tgttattcttaactttcgcattatggaatcatataaactatctcttgcaatttgattatgcctcctaatttttaattatcttcttgtagagagcatcagg |
12413744 |
T |
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| Q |
207 |
tggtggg |
213 |
Q |
| |
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|||||| |
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|
| T |
12413743 |
cggtggg |
12413737 |
T |
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