View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14957_low_35 (Length: 236)
Name: NF14957_low_35
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_35 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 5278665 - 5278458
Alignment:
| Q |
11 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5278665 |
gaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtgctcaacaa |
5278566 |
T |
|
| Q |
111 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
210 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
5278565 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatcca |
5278466 |
T |
|
| Q |
211 |
ggagttat |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
5278465 |
ggagttat |
5278458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 5282431 - 5282638
Alignment:
| Q |
11 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||| |
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|
| T |
5282431 |
gaggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctcaacaa |
5282530 |
T |
|
| Q |
111 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5282531 |
gggtgatgtgtttgtgttcccgattggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
5282630 |
T |
|
| Q |
211 |
ggagttat |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
5282631 |
ggagttat |
5282638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 5286646 - 5286439
Alignment:
| Q |
11 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5286646 |
gaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatcgtctctttaccaaggtgctcaacaa |
5286547 |
T |
|
| Q |
111 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
210 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
5286546 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgccgttgctattgctggacttagcagtcaaaatcca |
5286447 |
T |
|
| Q |
211 |
ggagttat |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
5286446 |
ggagttat |
5286439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 20358032 - 20357825
Alignment:
| Q |
11 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
20358032 |
gaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatcgtctctttaccaaagtgctcaacaa |
20357933 |
T |
|
| Q |
111 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
210 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
20357932 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatcca |
20357833 |
T |
|
| Q |
211 |
ggagttat |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
20357832 |
ggagttat |
20357825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 20353823 - 20354027
Alignment:
| Q |
11 |
gaggagcagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaa |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
20353823 |
gaggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctcaacaa |
20353922 |
T |
|
| Q |
111 |
gggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaaccca |
210 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20353923 |
gggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatcca |
20354022 |
T |
|
| Q |
211 |
ggagt |
215 |
Q |
| |
|
||||| |
|
|
| T |
20354023 |
ggagt |
20354027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 6235612 - 6235411
Alignment:
| Q |
17 |
cagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtga |
116 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || || ||||||||||| |
|
|
| T |
6235612 |
cagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctaaacaagggtga |
6235513 |
T |
|
| Q |
117 |
tgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagtt |
216 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6235512 |
tgtgtttgtgttcccaattggtcttattcattttcaactaaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagtt |
6235413 |
T |
|
| Q |
217 |
at |
218 |
Q |
| |
|
|| |
|
|
| T |
6235412 |
at |
6235411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 702528 - 702401
Alignment:
| Q |
85 |
cgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgcta |
184 |
Q |
| |
|
|||||| |||| || ||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||| |
|
|
| T |
702528 |
cgtctcattacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
702429 |
T |
|
| Q |
185 |
ttgctggacttagcagtcaaaacccagg |
212 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
|
|
| T |
702428 |
ttgctggacttagcagccaaaatccagg |
702401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 710860 - 710676
Alignment:
| Q |
19 |
gagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatg |
118 |
Q |
| |
|
||||| |||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| | || || ||||| ||||| || |||| |
|
|
| T |
710860 |
gagattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcatcacaaaagtactgaacaaaggagatg |
710764 |
T |
|
| Q |
119 |
tgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaa |
206 |
Q |
| |
|
|||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
710763 |
tgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaa |
710676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 717815 - 717709
Alignment:
| Q |
100 |
gtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagca |
199 |
Q |
| |
|
||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
717815 |
gtactaaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagca |
717716 |
T |
|
| Q |
200 |
gtcaaaa |
206 |
Q |
| |
|
| ||||| |
|
|
| T |
717715 |
gccaaaa |
717709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 712847 - 713031
Alignment:
| Q |
19 |
gagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatg |
118 |
Q |
| |
|
||||| |||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| |||| || ||||| ||||| || |||| |
|
|
| T |
712847 |
gagattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcattacaaaagtactgaacaaaggagatg |
712943 |
T |
|
| Q |
119 |
tgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaa |
206 |
Q |
| |
|
|||||||||| || || || || ||||| ||||| ||||||| || ||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
712944 |
tgtttgtgtttccaattggcctcattcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaa |
713031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 35313548 - 35313728
Alignment:
| Q |
35 |
tggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgat |
134 |
Q |
| |
|
||||||| || ||||| ||||||||||| | |||||||||||||| || |||||||| ||||| ||| | ||||| |||||||| |||||||| || || |
|
|
| T |
35313548 |
tggaaggcacactttacgttggatttgtttcctcaaatcaagacaataaccgtctcttcaccaaagtattgaacaaaggtgatgtatttgtgtttccaat |
35313647 |
T |
|
| Q |
135 |
cggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagt |
215 |
Q |
| |
|
|||||| ||||| || || |||| || || ||||| | ||| |||| |||||||| ||||| || |||||||| ||||| |
|
|
| T |
35313648 |
cggtctcattcacttccaattgaacgttggttatggggaggctattgccattgctggtcttagtagccaaaaccctggagt |
35313728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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