View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14957_low_36 (Length: 234)
Name: NF14957_low_36
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 8400697 - 8400898
Alignment:
| Q |
18 |
gtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaacagcttaagtcccagattgaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8400697 |
gtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaacagcttaagtcacagattgaaac |
8400796 |
T |
|
| Q |
118 |
cacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8400797 |
aacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagtt |
8400896 |
T |
|
| Q |
218 |
at |
219 |
Q |
| |
|
|| |
|
|
| T |
8400897 |
at |
8400898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 8422274 - 8422475
Alignment:
| Q |
18 |
gtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaacagcttaagtcccagattgaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8422274 |
gtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaacagcttaagtcccagattgaaac |
8422373 |
T |
|
| Q |
118 |
cacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagtt |
217 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8422374 |
aacaatagcaattgggaaccccacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagtt |
8422473 |
T |
|
| Q |
218 |
at |
219 |
Q |
| |
|
|| |
|
|
| T |
8422474 |
at |
8422475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 8368713 - 8368512
Alignment:
| Q |
18 |
gtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaacagcttaagtcccagattgaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8368713 |
gtatgttaattatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaacagcttaagtctcagattgaaac |
8368614 |
T |
|
| Q |
118 |
cacaatagcaataggaaaccccacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagtt |
217 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8368613 |
tacaatagcaattggtaaccccacagaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagtt |
8368514 |
T |
|
| Q |
218 |
at |
219 |
Q |
| |
|
|| |
|
|
| T |
8368513 |
at |
8368512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 8375568 - 8375634
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
93 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
8375568 |
ttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgttcaa |
8375634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 8395253 - 8395323
Alignment:
| Q |
26 |
attatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
96 |
Q |
| |
|
||||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8395253 |
attatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
8395323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8439535 - 8439469
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
93 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
8439535 |
ttatcatgaacaaaatccaaccttctcaattggccgaggaacaaagaaatgctacaagattgttcaa |
8439469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 8406318 - 8406249
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaaaca |
96 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
8406318 |
ttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaaaca |
8406249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8412438 - 8412372
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
93 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
8412438 |
ttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaa |
8412372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8434536 - 8434470
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
93 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
8434536 |
ttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagaaatgctacaagattgttcaa |
8434470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8417653 - 8417587
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
93 |
Q |
| |
|
||||||||||||||||||||||||| ||| | || ||||||||| |||| | |||||||||||||| |
|
|
| T |
8417653 |
ttatcatgaacaaaatccaaccttctcaattggccgaggagcaatgaaacactacaagattgttcaa |
8417587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 8431466 - 8431400
Alignment:
| Q |
27 |
ttatcatgaacaaaatccaaccttcacaacttgctgaggagcaaagaaatgcaacaagattgttcaa |
93 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | || || ||||| ||||| |||||||||||||| |
|
|
| T |
8431466 |
ttatcatgaacaaaatccaaccctctcaactcacagaagaacaaaggaatgccacaagattgttcaa |
8431400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 8404372 - 8404344
Alignment:
| Q |
32 |
atgaacaaaatccaaccttcacaacttgc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8404372 |
atgaacaaaatccaaccttcacaacttgc |
8404344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University