View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_4 (Length: 583)
Name: NF14957_low_4
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 4762524 - 4762781
Alignment:
| Q |
15 |
attctcaacgtggatgttaattaagagtatcacaagtattttttagaggatataatctcaaagttttcttttactaaagttcgatcaaacatatattata |
114 |
Q |
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| T |
4762524 |
attctcaacgtggatgttaattaagagtctcacaagtattttttagaggatataatctcaaagttttcttttactaaagttcgatcaaacatatattata |
4762623 |
T |
|
| Q |
115 |
gacttatttacggtctgaaatggctaagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatctagtgtcacaaataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762624 |
gacttatttacggtctgaaatggctaagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatctagtgtcacaaataa |
4762723 |
T |
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| Q |
215 |
aaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762724 |
aaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
4762781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 302 - 564
Target Start/End: Original strand, 4638421 - 4638684
Alignment:
| Q |
302 |
gttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatatttcataactctcatttca |
401 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
4638421 |
gttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatacat--ttcataactctcatttca |
4638518 |
T |
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| Q |
402 |
tagtttagaaatgagtgttatcttcttttggagggtggtgaggatgtggtttgggtaagttggtaggatgtataggatgaggtttagaaccttgatgagg |
501 |
Q |
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| T |
4638519 |
tagtttagaaatgagtgttatcttcttttggagggtggtgaggatgtggtttgggtaagttggtaggaagtataggatgaggtttagaaccttgatgagg |
4638618 |
T |
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| Q |
502 |
aatttcttgagtagacggtggatgttttg---gatgatgacgaggaacttcttgagtagacggtgg |
564 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4638619 |
aaattcttgagtagacggtggatgttttggatgatgatgacgaggaacttcttgagtagacggtgg |
4638684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 302 - 482
Target Start/End: Original strand, 4762824 - 4763002
Alignment:
| Q |
302 |
gttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatatttcataactctcatttca |
401 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
4762824 |
gttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatacat--ttcataactctcatttca |
4762921 |
T |
|
| Q |
402 |
tagtttagaaatgagtgttatcttcttttggagggtggtgaggatgtggtttgggtaagttggtaggatgtataggatgag |
482 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4762922 |
tactttagaaatgattgttatcttcttttggagggtggtgaggatgtggtttgggtaagttggtaggatgtataggatgag |
4763002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 75 - 272
Target Start/End: Complemental strand, 4181309 - 4181104
Alignment:
| Q |
75 |
aagttttcttttactaaagttcgatcaaacatatattatagacttatttacggtctgaaatggct----aagtataaatcaatcaaaccaatcaatctca |
170 |
Q |
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|||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||| |
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| T |
4181309 |
aagttttcttttcctaaaattcgaccaaacttatattatagacttatttacggtctgaaattgctcgatatatataaatcaatcaaacctatcaatctca |
4181210 |
T |
|
| Q |
171 |
cacaatcataaaatttatttattataatctagtgtcacaaataaaaatatttaaaatctgca----gtacatagcattctttcttgtcaagtaattttta |
266 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4181209 |
cacaatcataatatttatttattataatctagtgtcacaaataaaaatatttaaaatctgcagtacgtacatagcattctttcttgtcaagtaattttta |
4181110 |
T |
|
| Q |
267 |
ttcatg |
272 |
Q |
| |
|
|||||| |
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|
| T |
4181109 |
ttcatg |
4181104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 303 - 447
Target Start/End: Complemental strand, 4181069 - 4180925
Alignment:
| Q |
303 |
ttgccaactaggagagcacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatatttcataactctcatttcat |
402 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |
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| T |
4181069 |
ttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacctattcagtacatatatatagttcaaaactctcatttcat |
4180970 |
T |
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| Q |
403 |
agtttagaaatgagtgttatcttcttttggagggtggtgaggatg |
447 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4180969 |
actttagaaatgagtgttatcttcttttggagggtggtgaggatg |
4180925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 106 - 272
Target Start/End: Complemental strand, 4177454 - 4177284
Alignment:
| Q |
106 |
tatattatagacttatttacggtctgaaatggct----aagtataaatcaatcaaaccaatcaatctcacacaatcataaaatttatttattataatcta |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
4177454 |
tatattatagacttatttacggtctgaaattgctcgatatatataaatcaattaaacctatcaatctcacacaatcataatatttatttattataatctg |
4177355 |
T |
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| Q |
202 |
gtgtcacaaataaaaatatttaaaatctgcagtacatagcattctttcttgtcaagtaatttttattcatg |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4177354 |
gtgtcacaaataaaaatatttataatctgcagtacatagcactctttcttgtcaagtaatttttattcatg |
4177284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 302 - 447
Target Start/End: Complemental strand, 4177244 - 4177099
Alignment:
| Q |
302 |
gttgccaactaggagagcacatattactata--gaaaacaaacagcttggtaactaggaccacttattcagtacatatatatatttcataactctcattt |
399 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
4177244 |
gttgccaagtaggagagtacatattactatatagaaaacaaacagcttggtaactagaaccacttattcagtacatatatat--ttcataactctcattt |
4177147 |
T |
|
| Q |
400 |
catagtttagaaatgagtgttatcttcttttggagggtggtgaggatg |
447 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4177146 |
catactttagaaatgagtgttatcttcttttggagggtggtgaggatg |
4177099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 4638281 - 4638401
Alignment:
| Q |
97 |
gatcaaacatatattatagacttatttacggtctgaaatggctaagtata------aatcaatcaaaccaatcaatctcacacaatcataaaatttattt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
4638281 |
gatcaaacatatattatagacttatttacgctctaaaatggctaggtatatatataaatcaatcgcaccaatcaatatcacacaatcataatatttattt |
4638380 |
T |
|
| Q |
191 |
attataatctagtgtcacaaa |
211 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
4638381 |
attataatctggtgtcacaaa |
4638401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 4638032 - 4638097
Alignment:
| Q |
43 |
atcacaagtattttt--tagaggatataatctcaaagttttcttttactaaagttcgatcaaacata |
107 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
4638032 |
atcacaagtatttttgttagatgatataatctcga-gttttcttttactaaaattcgatcaaacata |
4638097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 4638660 - 4638705
Alignment:
| Q |
498 |
gaggaatttcttgagtagacggtggatgttttggatgatgacgagg |
543 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||| |||| |
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| T |
4638660 |
gaggaacttcttgagtagacggtggatggtttggatgatgatgagg |
4638705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 4808894 - 4808960
Alignment:
| Q |
324 |
attactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatatatatttcataa |
390 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||| ||||||| || | ||||||| ||||||| |
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| T |
4808894 |
attactacagaaaacaaacagctccgtaactaagaccaattattcaatatagatatatagttcataa |
4808960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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