View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_6 (Length: 471)
Name: NF14957_low_6
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 38899271 - 38899719
Alignment:
| Q |
20 |
tctagagtatgaattgtgtggtggagttaccgaaaaaggccgcgaaaatgtgtttgtttcgagggaaaaagattcttattggaaggaagttcaagaagag |
119 |
Q |
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| T |
38899271 |
tctagagtatgaattgtgtggtggagttacagaaaaaggccgcgaaaatgtgtttgtttcgagggaaaaagattcttattggaaggaagttcaagaagag |
38899370 |
T |
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| Q |
120 |
ttaatggaagagacaagtttagttgatcttttgctgataggagctgaagctgctgaatcacaaaacatgactcttgcttctgacataatcgaaaaactaa |
219 |
Q |
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| T |
38899371 |
ttaatggaagagacaagtttagttgatcttttgctgataggagctgaagctgctgaatcacaaaacatgactcttgcttctgacataatcgaaaaactaa |
38899470 |
T |
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| Q |
220 |
acaatgcctcgtctgtaggaaaaggcgatagtttattgaacaggttgtgtcttttctttactcgaggattgtattataaaactacaaatgctcctaagtt |
319 |
Q |
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| T |
38899471 |
acaatgcctcgtctgtaggaaaaggcgatagtttattgaacaggttgtgtcttttctttactcaaggattgtattataaaactacaaatgctcctaagtt |
38899570 |
T |
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| Q |
320 |
ccattcagaacatgtttctacacagacaagcacattctgtgtgtttcagatacttcaagaactctctccctatgtaaaatttgctcattttacagccaac |
419 |
Q |
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| T |
38899571 |
ccattcagaacatgtttctacacagacaagcacattctgtgtgtttcagatacttcaagaactctctccctatgtaaaatttgctcattttacagccaac |
38899670 |
T |
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| Q |
420 |
caggcaattttcgaagctacagctggtgtcgatgatgtccatctcattg |
468 |
Q |
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| T |
38899671 |
caggcgattttcgaagctacagctggtgtcgaagatgttcatgtcattg |
38899719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 38645233 - 38645059
Alignment:
| Q |
20 |
tctagagtatgaattgtgtggtggagttaccgaaaaaggccgcgaaaatgtgtttgtttcgagggaaaaagattcttattggaaggaagttcaagaagag |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| |
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| T |
38645233 |
tctagagaatgaattgtgtggtggagttaccgaaaaaggccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagag |
38645134 |
T |
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| Q |
120 |
ttaatggaagagacaagtttagttgatcttttgctgataggagctgaagctgctgaatcacaaaacatgactctt |
194 |
Q |
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| T |
38645133 |
ctaatggaagagacatgtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctt |
38645059 |
T |
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