View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14957_low_8 (Length: 413)
Name: NF14957_low_8
Description: NF14957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14957_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 413
Target Start/End: Complemental strand, 1768118 - 1767837
Alignment:
| Q |
128 |
aagtacttcactacgaggtgtttgtttaacggtacaaacttaatataaaatgcatcattagtagcttagatctagttcaatgagtaatgtcgaatttgtt |
227 |
Q |
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| T |
1768118 |
aagtgcttcactacgaggtgtttatttaacggtacaaacttaatataaaatgcatcattagtagcttagatctagttccatgagtaatgtcgaatttgtt |
1768019 |
T |
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| Q |
228 |
agactaaattaacacttttatttaggttcaaatctactatctaataattgtatgtgtgaatttagggtggtgtgtttatcacttcgtcaatgaaaaaaca |
327 |
Q |
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| T |
1768018 |
agactaaa----cacttttattttggttcaaatccactatctaataattgtatgtgtgaatttagggtggtgtgtttatcacttcgtcaatgaaaaaaca |
1767923 |
T |
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| Q |
328 |
atcactcttgtgaatttaacctgctatttgatgaatatttttggtgtgcggatcatgtagcgtaggagaagagtgggctcaatttt |
413 |
Q |
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| T |
1767922 |
attactcttgtgaatttaacccgcgatttgatgaatttttttggtgtgcggatcatgtagcgtaggagaagagtgggctcaatttt |
1767837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1768245 - 1768192
Alignment:
| Q |
1 |
ttgtggtatgtatctactaggcagtaagcaccattagtccatagcttgagatga |
54 |
Q |
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| T |
1768245 |
ttgtggtatgtatctactaggcagtaagcaccattagtccatagtttgagatga |
1768192 |
T |
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