View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14958_high_1 (Length: 344)
Name: NF14958_high_1
Description: NF14958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14958_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 29319998 - 29320321
Alignment:
| Q |
2 |
tatttagtattttatcttaattttcaattaatatagtaccccaaaaaagttcaattgatgttttttaatgaaatttagatgagttgtgtctcaggaactc |
101 |
Q |
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| T |
29319998 |
tatttagtattttatcttaattttcaattaatatagtaccccaaaaaagttcaattgatgttttttaatgaaatttagatgagttgtgtctcagggactc |
29320097 |
T |
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| Q |
102 |
atcgtggata----aggattattgattctaacatgtcaaacatgtagctattttttgttttaatatattcttacatgcatgttctaaaaatgtagcaatg |
197 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29320098 |
atcgtggatatataaggattattgattctaacatgtcaaacatgtagctattttttgttttaatatattcttacatgcatgttctaaaaatgtagcaatg |
29320197 |
T |
|
| Q |
198 |
cgggccgagtagaaattaatgttttataacatgtgagaaaagnnnnnnnngatgaacgactaattaaacatttgggagaaatattgtaatatctaaggtc |
297 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29320198 |
cgggacgagtagaaattaatgttttataacatgtgagaaaa-aaaaagaagatgaatgactaattaaacatttgggagaaatattgtaatatctaaggtc |
29320296 |
T |
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| Q |
298 |
gaattgtagaaatgtccctatagta |
322 |
Q |
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||||||||||||||||||||||||| |
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| T |
29320297 |
gaattgtagaaatgtccctatagta |
29320321 |
T |
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