View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_high_14 (Length: 242)
Name: NF14959_high_14
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 20434996 - 20434862
Alignment:
| Q |
16 |
ctgcagtatgatgaaaacaatactagtagaatgaccttcattgttatagaaaaagaagggtgatacaagaaccatgtgaaaatgtgctaatgtacaaaat |
115 |
Q |
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| T |
20434996 |
ctgcagtatgatgaaaacaatactaataaaatgaccttcattgatatagaaaaagaagggtgatacaagaaccatgtgacaatgtgctaatgtacaaaat |
20434897 |
T |
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| Q |
116 |
cctgtcattatgtacgtatgtaaagatggatgaag |
150 |
Q |
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| T |
20434896 |
tctgtcattgtgtatgtctgtaaagatggatgaag |
20434862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 20434839 - 20434791
Alignment:
| Q |
178 |
catgtattgattgttcgttattagattcaacggtgttaaatgatccaag |
226 |
Q |
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| T |
20434839 |
catgtattgattgttcgttattagattcaacggtgtttcatgatccaag |
20434791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 41485618 - 41485688
Alignment:
| Q |
60 |
tatagaaaaagaagggtgatacaagaa-ccatgtgaaaatgtgctaatgtacaaaatcctgtcattatgta |
129 |
Q |
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| T |
41485618 |
tatagaaaaagaagggttatacaagaaaccctgtgaaaatgtgctaatgtacaaaattctgtcattatgta |
41485688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 41482326 - 41482406
Alignment:
| Q |
50 |
ccttcattgttatagaaaaagaagggtgatacaagaa-ccatgtgaaaatgtgctaatgtacaaaatcctgtcattatgta |
129 |
Q |
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| T |
41482326 |
ccttcattgatatagaaaaggaagggttatacaagaaaccctgtgaatatgtgctaatgtacaaaattctgtcattatgta |
41482406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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