View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14959_high_3 (Length: 558)
Name: NF14959_high_3
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 47280781 - 47281321
Alignment:
| Q |
1 |
aactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47280781 |
aactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacgggcaccgtgggaaattg |
47280880 |
T |
|
| Q |
101 |
ccttcatcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatataaataaatgagagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280881 |
ccttcatcaccagctccgtttcaccatgtgcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatataaataaatgagagt |
47280980 |
T |
|
| Q |
201 |
gaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttcaagtcctacaagtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280981 |
gaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatccccccaacttacttatgacaggaagatccatttcaagtcctacaagtt |
47281080 |
T |
|
| Q |
301 |
ccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatagtcaatgcagttattgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
47281081 |
ccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttcttgcaacatagtcaatgcagttattgc |
47281180 |
T |
|
| Q |
401 |
ttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattcagaacgagcaaa-tacactttgcatgtatatccaggactaga |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
47281181 |
ttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattcagaacgagcaaagtacactttgcatgtatatccaggactaga |
47281280 |
T |
|
| Q |
500 |
acagagcaattgtgatatacttgaaaaacaaaaattctaac |
540 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
47281281 |
acagagcaattgtgaaatacttgaaaaacaaaaattctaac |
47281321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 47275111 - 47275529
Alignment:
| Q |
16 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttcatcaccagct |
115 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||| |||| |
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|
| T |
47275111 |
ttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatcactagct |
47275210 |
T |
|
| Q |
116 |
ccgtttcaccatgagcagacaacactgaaatcaaacaattta---taac--aacaatcattgattaataattatataaataaatgagagtgaaaatgaag |
210 |
Q |
| |
|
| | || | | |||||||||||||||| |||||| | | || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
47275211 |
cattatcgctagattcagacaacactgaaataaaacaacaaacgttcaccaaacaatcattgattaataattatatgaataaatgagagtgaaaatgaag |
47275310 |
T |
|
| Q |
211 |
aaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttacttatgaca---ggaagatccatttcaagtcctacaagttccagcag |
307 |
Q |
| |
|
||||| | |||||||||||| ||||| |||| | ||||||||| |||| |||||||| ||| ||||| ||| | |||||| | |||||||| ||||| |
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|
| T |
47275311 |
aaacaaagcaaagatgaagaactgaagattacagaacagatcccccca-cttacttacgacgaccggaaggtccgtctcaagttccacaagttcaagcag |
47275409 |
T |
|
| Q |
308 |
cttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatagtcaatgcagttattgcttcacta |
407 |
Q |
| |
|
||| ||||||||||||||||||| ||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||| |||| |
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|
| T |
47275410 |
cttaagtccatccatgtcaggcaggtgcacatcagcgattaccaggtcaaacttgtctttgttttctcgcaacatagtcaatgccgtttttgcttgacta |
47275509 |
T |
|
| Q |
408 |
gttgtggttactgcaatccc |
427 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
47275510 |
gttgtcgttactgcaatccc |
47275529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 49060903 - 49061346
Alignment:
| Q |
7 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttca |
106 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| | |||| |
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|
| T |
49060903 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttca |
49061002 |
T |
|
| Q |
107 |
tcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaa-----tcattgattaataattatataaataaatgagagtg |
201 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||| ||||||| | ||| |||||||||| || | ||| |||||| | ||| |
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|
| T |
49061003 |
tcaccagctttgtatcaccatatgcagacaacactgaaatcaaacattttataaaaccaaaagtatcattgattagtagtcgtatcaataaacaatagtc |
49061102 |
T |
|
| Q |
202 |
aaaatgaagaaacagaacaa--------agatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttcaagtcct |
293 |
Q |
| |
|
|||||||| ||| |||| || | || || ||| || |||| | |||||||| | ||||||||||||| ||||| |||||||||||||| |
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|
| T |
49061103 |
aaaatgaataaatagaaaaagaagaaaaaaattaacagccaaagattacatgacagatcccc---acttacttatgacgggaaggtccatttcaagtccc |
49061199 |
T |
|
| Q |
294 |
acaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatagtcaatgcag |
393 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||||||| || ||| |||||||||||||||| ||||| ||||||||| |||||| ||||| || | |
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|
| T |
49061200 |
acaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccaggtcaaacttgtctttgttttctctcaacatggtcaacgccg |
49061299 |
T |
|
| Q |
394 |
ttattgcttcactagttgtggttactgcaatcccaagtcaaaaataa |
440 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49061300 |
ttattgcttgactagttgtggttactgcaatccccagtcagaaataa |
49061346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 533
Target Start/End: Original strand, 38099213 - 38099325
Alignment:
| Q |
435 |
aaataaataagatagatattattcagaa----cgagcaaa-tacactttgcatgta-------tatccaggactagaacag--agcaattgtgatatact |
520 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||| || |||| ||||||||||| ||||| |
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|
| T |
38099213 |
aaataaataagatagttattattcagaacgatcgagcaaagtacactttgcatgtatatccattatccaggaccagcacagaaagcaattgtgaaatact |
38099312 |
T |
|
| Q |
521 |
tgaaaaacaaaaa |
533 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38099313 |
tgaaaaacaaaaa |
38099325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 2893425 - 2893287
Alignment:
| Q |
22 |
attacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttcatcaccagctccgttt |
121 |
Q |
| |
|
|||||||||||||||||| || || ||| | || ||| ||||||||||||||| ||||||| |||||||| |||| | |||||||||| || || | |
|
|
| T |
2893425 |
attacatgctgccaaatgatctgtacctctttcagtctaacaggtttcagcagataatcacaagcaccgtgttcaattcctttcatcaccatcttcggat |
2893326 |
T |
|
| Q |
122 |
caccatgagcagacaacactgaaatcaaacaatttataa |
160 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
2893325 |
catcattcgcagaaaacactgaaatcaaacactttataa |
2893287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 2888633 - 2888554
Alignment:
| Q |
258 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
337 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
|
|
| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2888554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 2904736 - 2904657
Alignment:
| Q |
258 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
337 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
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|
| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2904657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 34316118 - 34316047
Alignment:
| Q |
262 |
tacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
333 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||| || || |||| ||||||||||||||||||| |
|
|
| T |
34316118 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
34316047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 381
Target Start/End: Original strand, 48870446 - 48870569
Alignment:
| Q |
258 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaa |
357 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| | | |||||| ||||||| |
|
|
| T |
48870446 |
aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaa |
48870545 |
T |
|
| Q |
358 |
acatgtctatgttttctcgcaaca |
381 |
Q |
| |
|
| ||| | ||||||||| ||||| |
|
|
| T |
48870546 |
aattgtttttgttttctctcaaca |
48870569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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