View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_high_8 (Length: 289)
Name: NF14959_high_8
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 12505221 - 12504972
Alignment:
| Q |
16 |
atgaatggacctggtggcatgttggttttgaagactgttgaattgtatttttgaattctagttgagaagaatttgtctctgcctttgttgtagaaaaagt |
115 |
Q |
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| T |
12505221 |
atgaatggacctggtggcatgttggttttgaagactgttgaattgtatttttgtattcttgttgagaagaatttgtctctgccttggttatagaaaaagt |
12505122 |
T |
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| Q |
116 |
catgtcggtccaaaatcggtccgatgaaagggaggccataggttcctgggatttcttttagtggaagctcttgctggtgattgttgatggtggtggaaga |
215 |
Q |
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| T |
12505121 |
catgtcggtccaaaatcggtccgatgaaagggaggccataggttcctgggatttcttttagtggaagctcttgctggtgattgctgatggtggtggaaga |
12505022 |
T |
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| Q |
216 |
ttgtggtgaagatgctgccatgtgagatatgaaactcgatattttgatag |
265 |
Q |
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| T |
12505021 |
ttgtggtgaagatgctgccatgggagatatgaaactcgatattttgatag |
12504972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 12490676 - 12490505
Alignment:
| Q |
16 |
atgaatggacctggtggcatgttggttttgaagactgttgaattgtatttttgaattctagttgagaagaatttgtctctgcctttgttgtagaaaaagt |
115 |
Q |
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||||| ||||||||||||||||||||| |||||| |||||| ||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||| |
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| T |
12490676 |
atgaagggacctggtggcatgttggttctgaagattgttgagttgtatttttggattcttgttgagaagaatttgtctcttccttggttgtagaagtagt |
12490577 |
T |
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| Q |
116 |
catgtcggtccaaaatcggtccgatgaaagggaggccataggttcctgggatttcttttagtggaagctctt |
187 |
Q |
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| T |
12490576 |
cgtgtcggtcgaagatcggtccgatgaaagggaggccatagctgcctgggatttgttttagtgggagctctt |
12490505 |
T |
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