View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_low_13 (Length: 278)
Name: NF14959_low_13
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 3907818 - 3907678
Alignment:
| Q |
16 |
agaccatttgtgattccaattgctattttcatccttgttggccattcgatgatgatttctggtccacgagctgcaa--atatgtgtagaaatatcaatat |
113 |
Q |
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| T |
3907818 |
agaccattagtgattccaatagctattttcatccttgttggccattcgacgacaatttcaggtccacgagctgcaaatatatgtgcagaaatatcaatat |
3907719 |
T |
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| Q |
114 |
tagatgtattgacttataaattgggagatgaaatatttgtt |
154 |
Q |
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| T |
3907718 |
cagatgtattaacttataaattaggagatgaaatatttgtt |
3907678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 3924102 - 3924032
Alignment:
| Q |
190 |
ataagtttcagattctcaggagtcacgaaaccacacaccaaacacaagtacgtgatatggaccattgaacc |
260 |
Q |
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| T |
3924102 |
ataagtttcagattctcaggagtcacgaaaccacacgccaaacacaagtacgtgatatggaccattgaacc |
3924032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 3907652 - 3907602
Alignment:
| Q |
138 |
gagatgaaatatttgttaactaataagattagctatgcattctaatttcaa |
188 |
Q |
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| T |
3907652 |
gagatgaaatatttgttaactaataagactagctatgcattctaatttcaa |
3907602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 3923365 - 3923288
Alignment:
| Q |
104 |
atatcaatattagatgtattgacttataaattgggagatgaaatatttgttaactaataagattagctatgcattctaa |
182 |
Q |
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| T |
3923365 |
atatcaatatcagaagtattggcttataaattaagagataaaagacttattaactaata-gattagcaatgcattctaa |
3923288 |
T |
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