View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14959_low_14 (Length: 272)

Name: NF14959_low_14
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14959_low_14
NF14959_low_14
[»] chr5 (18 HSPs)
chr5 (17-264)||(7193660-7193907)
chr5 (18-195)||(10659463-10659640)
chr5 (18-195)||(10651580-10651757)
chr5 (21-168)||(9827364-9827511)
chr5 (21-168)||(9835733-9835880)
chr5 (90-168)||(10612437-10612515)
chr5 (86-155)||(10587895-10587964)
chr5 (80-168)||(10551518-10551606)
chr5 (96-170)||(10559631-10559705)
chr5 (96-170)||(10746434-10746508)
chr5 (96-168)||(10605485-10605557)
chr5 (96-168)||(10739830-10739902)
chr5 (96-168)||(10762245-10762317)
chr5 (90-168)||(10581722-10581800)
chr5 (90-153)||(10565730-10565793)
chr5 (96-170)||(10716391-10716465)
chr5 (105-214)||(19605225-19605334)
chr5 (46-115)||(10760796-10760865)
[»] chr2 (1 HSPs)
chr2 (76-170)||(17922820-17922914)
[»] chr6 (5 HSPs)
chr6 (76-170)||(12958770-12958864)
chr6 (76-170)||(12907882-12907976)
chr6 (90-170)||(12900279-12900359)
chr6 (104-170)||(12949339-12949405)
chr6 (98-170)||(12932993-12933065)
[»] chr3 (1 HSPs)
chr3 (80-177)||(31466553-31466650)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 7193660 - 7193907
Alignment:
Q  17 aatcttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7193660 aatcttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattg 7193759  T
Q  117 gacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatcaaaaacgcttatctcgctggtaagta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7193760 gacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatcaaaaacgcttatctcgctggtaagta 7193859  T
Q  217 tgatccatacttgtagatacttaaccgcatgtgcaattaccctatgct 264  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7193860 tgatcgatacttgtagatacttaaccgcatgtgcaattaccttatgct 7193907  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 10659640 - 10659463
Alignment:
Q  18 atcttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattgg 117  Q
    |||||||||||||||||  |||||| | ||||||||| ||||| |||||||||||| ||||||  |||||||||||| |||||||||||||| |||||||    
T  10659640 atcttgtaccaagaaatgaagaagccaaaatagaagaaggaaagagtggaaatttccctccaatcgtagagaagtgcttagtttcactttttcggattgg 10659541  T
Q  118 acttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatcaaaaa 195  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  10659540 acttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagagagttaagcataatcaaaaa 10659463  T

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Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 10651757 - 10651580
Alignment:
Q  18 atcttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattgg 117  Q
    |||||||||||||||||  ||||| |  ||||||||| |||||| |||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||    
T  10651757 atcttgtaccaagaaatgaagaagaagaaatagaagaaggaaactgtggaaatttcactccaactgtagagaagtgtttagtttcacttttcaggattgg 10651658  T
Q  118 acttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatcaaaaa 195  Q
    |||||||||||||||| |||||||||||||||||||||| |||||  ||||||| ||||| ||| |||| || |||||    
T  10651657 acttgcttgttcagtgaaatcaccaaaagaaagaatgaacatagttaatgtcatgagagagttaggcatgataaaaaa 10651580  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 9827511 - 9827364
Alignment:
Q  21 ttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattggact 120  Q
    ||||||||||| ||  ||||||| |||||||||||||||| ||||  ||| | | ||||  |||| |||| ||| |||||||| |||| |||||||||||    
T  9827511 ttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggact 9827412  T
Q  121 tgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    ||| ||||||   ||||||||||||||||||||||| ||||| |||||    
T  9827411 tgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgt 9827364  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 9835880 - 9835733
Alignment:
Q  21 ttgtaccaagaaatatagaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattggact 120  Q
    ||||||||||| ||  ||||||| |||||||||||||||| ||||  ||| | | ||||  |||| |||| ||| |||||||| |||| |||||||||||    
T  9835880 ttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggact 9835781  T
Q  121 tgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    ||| ||||||   ||||||||||||||||||||||| ||||| |||||    
T  9835780 tgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgt 9835733  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 10612437 - 10612515
Alignment:
Q  90 agtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    ||||| ||||||||||||||||||||||||||  ||||||| |||||||||| ||||||||||||||||| ||||||||    
T  10612437 agtgcttagtttcactttttaggattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgt 10612515  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 10587964 - 10587895
Alignment:
Q  86 gagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatga 155  Q
    ||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||    
T  10587964 gagaagtgcttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaaagaaagaatga 10587895  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 10551518 - 10551606
Alignment:
Q  80 aatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    ||||||||||| ||  || |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  10551518 aatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 10551606  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 10559631 - 10559705
Alignment:
Q  96 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| |||| | |||||||||||||| |||||||||    
T  10559631 tagtttcactctttaggattggacttgcatgttcggtggaatcgccaacacaaagaatgaatatattggatgtca 10559705  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 10746508 - 10746434
Alignment:
Q  96 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||||||||||||||||||||||||  |||| || | |||||||||||||||||||||||||  ||||||||||    
T  10746508 tagtttcactttttaggattggacttatttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtca 10746434  T

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Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 10605485 - 10605557
Alignment:
Q  96 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    |||||||||||||||| |||||||||  ||||||| |||||||||| |||||||||||||||||  |||||||    
T  10605485 tagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgt 10605557  T

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Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 10739902 - 10739830
Alignment:
Q  96 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    |||||||||||||||| |||||||||  ||||||| |||||||||| |||||||||||||||||  |||||||    
T  10739902 tagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgt 10739830  T

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Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 10762317 - 10762245
Alignment:
Q  96 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    |||||||||||||||| |||||||||  ||||||| |||||||||| |||||||||||||||||  |||||||    
T  10762317 tagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgt 10762245  T

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Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 10581722 - 10581800
Alignment:
Q  90 agtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 168  Q
    ||||| ||||||||||||||||||||||||||   |||||| |||| ||||||||||||||| ||||||| | ||||||    
T  10581722 agtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaagactgaatattgaggatgt 10581800  T

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Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 10565730 - 10565793
Alignment:
Q  90 agtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaat 153  Q
    ||||| ||||||||||||||||||||||||||   |||||| |||| |||||||||||||||||    
T  10565730 agtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaagaat 10565793  T

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Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 10716465 - 10716391
Alignment:
Q  96 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||||| ||||| ||||||||||||| |||| || |||||||||| | |||||||||||||||  |||||||||    
T  10716465 tagtttctcttttcaggattggacttgtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtca 10716391  T

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Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 19605334 - 19605225
Alignment:
Q  105 tttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatcaaaaacgcttatct 204  Q
    ||||||||||||||||||| |||||  ||||||| || |||||||||||||||||||  |||| ||  |||||  ||| |||||||| |||  ||| |||    
T  19605334 tttttaggattggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatcagaaagacttttct 19605235  T
Q  205 cgctggtaag 214  Q
    | ||||||||    
T  19605234 cactggtaag 19605225  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 10760865 - 10760796
Alignment:
Q  46 aatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggatt 115  Q
    |||| |||||||||||| ||| ||| | | ||||| ||||||||||||| |||||||||| |||||||||    
T  10760865 aatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt 10760796  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 17922914 - 17922820
Alignment:
Q  76 tccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||    
T  17922914 tccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtca 17922820  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 12958770 - 12958864
Alignment:
Q  76 tccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||| || |||||||    
T  12958770 tccaactgtagaggagtgcttagtttcactttttaggattggacttttatgttcattggaatcaccaaaagaaagaatgaatattgtcgatgtca 12958864  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 170
Target Start/End: Original strand, 12907882 - 12907976
Alignment:
Q  76 tccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||||||||||| ||||| ||  ||||||||||||||||||||||   |||||| |||||||| ||||||||||||||||||| || |||||||    
T  12907882 tccaaatgtagaggagtgcttaacttcactttttaggattggacttttatgttcattggaatcaacaaaagaaagaatgaatattgtagatgtca 12907976  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 12900279 - 12900359
Alignment:
Q  90 agtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||| ||||||||||| ||||||||| ||||   |||||  |||||||||||||||||||||||||||| ||||||||||    
T  12900279 agtgcttagtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtca 12900359  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 12949339 - 12949405
Alignment:
Q  104 ctttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||||||||||||||||  ||||||| |||||||| |||| |||||||||||||| ||||||||||    
T  12949339 ctttttaggattggacttttttgttcattggaatcatcaaatgaaagaatgaatattgtggatgtca 12949405  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 12932993 - 12933065
Alignment:
Q  98 gtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtca 170  Q
    ||||||||| ||||||||| ||||   |||||  |||||||||||||||||||||||||||| ||||||||||    
T  12932993 gtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtca 12933065  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 31466650 - 31466553
Alignment:
Q  80 aatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagaga 177  Q
    ||||||||||| ||  || ||||||||||||| |||| ||||| ||||||| ||||||||||||||||||| |||| ||| || || ||||| |||||    
T  31466650 aatgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagaga 31466553  T

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