View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_low_15 (Length: 270)
Name: NF14959_low_15
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 2598289 - 2598097
Alignment:
| Q |
1 |
ctagcccatttggacctttgatttttctataatatttgttttttattaagaaaaaacacgagac-agtagttaattataatcttaaaccttggtgatggt |
99 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2598289 |
ctagcccatctggacctttgatttttctataatatttgttttctattaagaaaaaacacgaggccagtagttaattataatcttaaaccttggtgatggt |
2598190 |
T |
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| Q |
100 |
ttcacgaatttggtccccataagtatacttggtgatggcctccaagtatagcttggagttggattatgtcctatatatcagcttccaagaaac |
192 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2598189 |
ttcacgaatttggtccccataaatatacttggtgatggcctccaagtatagcttggagttggattatgtcctatatatcagcttccaagaaac |
2598097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 2582983 - 2582849
Alignment:
| Q |
1 |
ctagcccatttggacctttgatttttctataatatttgttttttattaagaa-aaaacacgagacagtagttaattataatcttaaaccttggtgatggt |
99 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||| || |||||||||||||| ||||||| |
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| T |
2582983 |
ctagcccatttggacctttgatttttcgataatatttgttttttattaagaaaaaaacacaagacagtaatta--ta-aatcttaaaccttgctgatggt |
2582887 |
T |
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| Q |
100 |
ttcacgaatttggtccccataagtatacttggtgatgg |
137 |
Q |
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| T |
2582886 |
tccacgaatttggtccccataattatacttggtgatgg |
2582849 |
T |
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