View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_low_2 (Length: 616)
Name: NF14959_low_2
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 10 - 600
Target Start/End: Complemental strand, 7303585 - 7302979
Alignment:
| Q |
10 |
agaagcaaaggaagataaagaggaagtagtagcaattactggtgatgaaggagaagttgatgaagcnnnnnnntgcttgatgaaatcacttgctgatttg |
109 |
Q |
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| T |
7303585 |
agaagtaaaggaagataaagaggaagtagtagcaattactggtgatgaaggagaagttgatgaagcaaaaaaatgcttgatgaaatcacttgctgatttg |
7303486 |
T |
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| Q |
110 |
gatattgttttggaggatattcggattctcaaagagagagtggaaaagatcaactttgatatgcaacctctggatgatagattgaagtctctcaaaagct |
209 |
Q |
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| T |
7303485 |
gatattgttttggaggatattcggattctcaaagagagagtggaaaagatcaactttgatatgcaacctctggatgatagattgaagtctctcaaaagct |
7303386 |
T |
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| Q |
210 |
tgtgattgacaaca-caggagggtaaattgaagtgtgtcaaaagctttctacgtattaatctcaacccaccattatgggtgcttttataaatgattttgt |
308 |
Q |
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| T |
7303385 |
tgtgattggcaacctctggagggtaaattgaagtgtgtcaaaagctttctacgaattaatctcaacccaccattatgggggcttttataaatgattttgt |
7303286 |
T |
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| Q |
309 |
gtttactctcttttgaaatgttacaactgatttatttgattatcttatatggttgcttctgtttgttttgatctaatatgaaatcacaatgaaggaatgt |
408 |
Q |
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| T |
7303285 |
gtttactctcttttgaaatgttacaactgatttatttgattatcttatatggttgcttctgtttgttttgatctaatatgaaatcacaatgaaggaatgt |
7303186 |
T |
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| Q |
409 |
ttaggagtaaaaatagtgatttatttgattaatcttatatggttctccattatattgtccctcaaatggttgtaaattcattggttactggatagttagt |
508 |
Q |
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| T |
7303185 |
ttaggagtaaaaatagtgatttatttgattaatcttatatggttctccattatattgtccctcaaatggttgtaaattcattggttactggatagttagt |
7303086 |
T |
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| Q |
509 |
tgaatgtgaacaactgaacaagtatgcttctttgatat---------------aatagcattgtcttcttgttgctggaacaacaaaacttattcttgct |
593 |
Q |
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| T |
7303085 |
tgaatgtgaacaactgaacaagtatgcttctttgatataatacctcttgatataatagcattgtcttcttgttgctggaacaacaaaacttattcttgct |
7302986 |
T |
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| Q |
594 |
atatttt |
600 |
Q |
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| T |
7302985 |
atatttt |
7302979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 7353491 - 7353422
Alignment:
| Q |
303 |
ttttgtgtttactctcttttgaaatgttacaactgatttatttgattatcttatatggttgcttctgtttg |
373 |
Q |
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| T |
7353491 |
ttttgtgtttactctgttt-gaaatgttgcaactgatttatttgattatctaatatggttgcttctttttg |
7353422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 7353838 - 7353742
Alignment:
| Q |
315 |
tctcttttgaaatgttacaactgat--ttatttgattatcttatatggttgcttctgtttgttttgatctaatatgaaatcacaatgaaggaatgtt |
409 |
Q |
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| T |
7353838 |
tctcttttgaaatgttgcaactactggttatctgattatcttatatggctgcttgtttctgttttgatttaatctgaaactacaatgaaggaatgtt |
7353742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 341
Target Start/End: Complemental strand, 7336303 - 7336266
Alignment:
| Q |
304 |
tttgtgtttactctcttttgaaatgttacaactgattt |
341 |
Q |
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| T |
7336303 |
tttgtgtttactctcttttgaaatgttgcaactgattt |
7336266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 409
Target Start/End: Complemental strand, 7365436 - 7365335
Alignment:
| Q |
310 |
tttactctcttttgaaatgttacaact---gatttatttgattatcttatatggttgcttctgtttgttttgatctaatatgaaatcacaatgaaggaat |
406 |
Q |
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| T |
7365436 |
tttaatctcttttgaaatgttgcaacttctggtttcttagattat-ttatatcgttgcttctttttgtttcgaattaatctgaaatcacgatgaaggaat |
7365338 |
T |
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| Q |
407 |
gtt |
409 |
Q |
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||| |
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| T |
7365337 |
gtt |
7365335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 7341874 - 7341815
Alignment:
| Q |
300 |
tgattttgtgtttactctcttttgaaatgttacaactgatttatttgattatcttatatggt |
361 |
Q |
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| T |
7341874 |
tgattttgtgtt-actctcttctgaaatgttgcaactaatt-attagattatcttatatggt |
7341815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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