View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14959_low_4 (Length: 501)

Name: NF14959_low_4
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14959_low_4
NF14959_low_4
[»] chr2 (2 HSPs)
chr2 (73-482)||(12811355-12811765)
chr2 (19-73)||(14816055-14816112)
[»] chr8 (2 HSPs)
chr8 (19-76)||(755899-755959)
chr8 (19-74)||(35795589-35795647)
[»] chr5 (5 HSPs)
chr5 (19-73)||(6464333-6464390)
chr5 (19-73)||(42585985-42586042)
chr5 (19-77)||(42586345-42586406)
chr5 (38-79)||(128247-128288)
chr5 (225-257)||(11647516-11647548)
[»] chr1 (2 HSPs)
chr1 (19-80)||(37008209-37008273)
chr1 (19-75)||(12075271-12075330)
[»] chr7 (5 HSPs)
chr7 (19-78)||(18201348-18201410)
chr7 (19-73)||(282859-282916)
chr7 (19-73)||(327436-327493)
chr7 (19-72)||(24679102-24679158)
chr7 (19-74)||(43078061-43078119)
[»] chr4 (1 HSPs)
chr4 (19-72)||(30064002-30064058)
[»] chr3 (1 HSPs)
chr3 (19-78)||(53255282-53255344)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 73 - 482
Target Start/End: Complemental strand, 12811765 - 12811355
Alignment:
Q  73 tttaattttctcatctttattgcggtctttgtttgcatctgattgacaaatctatttcgatcaattatatattcaatttgacaaggcgttaacgttggag 172  Q
    |||||||||||||| || |||||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12811765 tttaattttctcattttcattgcggtgtttgtttgccttagattgacaaatctatttcgatcaattatatattcaatttgacaaagcgttaacgttggag 12811666  T
Q  173 atttggaggcatattattcatgtcactttgattttgtcatatttgtataagcattttgtcattttatattattaacgtggatgttatgannnnnnnngta 272  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||        |||    
T  12811665 atttggaggcatattattcatatcactttgattttgtcacatttgtataagcattttgtcattttatgttattaacgtggatgttatgattttttttgta 12811566  T
Q  273 gattaatcattttaagttttagcgatattaaatttgtagtacttttaatatattctaccagtttgaaggaaataatgtcatttttcctcaaaataaaata 372  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  12811565 gattaatcattttaagttttagcgatattaaatttgtggtacttttaatatattctaccagtttgaaggaattaatatcatttttcctcaaaataaaata 12811466  T
Q  373 aatttggtagctacgtatac-atatgattcaaaattattatattaaaaactttgatttgatttgaaataaaagaatttacacatcagtttgtaagatcta 471  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12811465 aatttggtagctacgtacacaagatgattcaaaattattatattaaaaactttgatttgatttgaaataaaagaatttacacatcagtttgtaagatcta 12811366  T
Q  472 gttcaactagc 482  Q
    |||||||||||    
T  12811365 gttcaactagc 12811355  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 14816055 - 14816112
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcct 73  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||| |||||||||||    
T  14816055 tagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 14816112  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 755959 - 755899
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagccttta 76  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||| ||||||||||||||    
T  755959 tagggggccaaaatcgcaacttcttgaaacatagagggccaaaactgctattaagccttta 755899  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 35795589 - 35795647
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcctt 74  Q
    ||||||||||||||| ||||||   ||||||||| ||||||||||| | ||||||||||    
T  35795589 tagggggccaaaatcacaacttcttgaaacatagggggccaaaactgcaattaagcctt 35795647  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 6464333 - 6464390
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcct 73  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||| |||||||||||    
T  6464333 tagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 6464390  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 42586042 - 42585985
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcct 73  Q
    ||||||| ||||||||||||||   ||||||||| ||||||||||| |||||||||||    
T  42586042 tagggggtcaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagcct 42585985  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 42586345 - 42586406
Alignment:
Q  19 tagggggccaaaatcgcaacttg---aaacatagtgggccaaaacttctattaagcctttaa 77  Q
    ||||||||||||||||||||||    |||||| | ||||||||||| |||||||||||||||    
T  42586345 tagggggccaaaatcgcaacttctgtaaacatggggggccaaaactgctattaagcctttaa 42586406  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 128288 - 128247
Alignment:
Q  38 cttgaaacatagtgggccaaaacttctattaagcctttaatt 79  Q
    |||||||||||| ||| ||||||| |||||||||||||||||    
T  128288 cttgaaacatagggggtcaaaactgctattaagcctttaatt 128247  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 11647516 - 11647548
Alignment:
Q  225 attttgtcattttatattattaacgtggatgtt 257  Q
    |||||||||||||| ||||||||||||||||||    
T  11647516 attttgtcattttaaattattaacgtggatgtt 11647548  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 37008273 - 37008209
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcctttaattt 80  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||| ||||||||| ||| ||||    
T  37008273 tagggggccaaaatcgcaacttcttgaaacatagggggccaaaactgctattaagctttttattt 37008209  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 12075271 - 12075330
Alignment:
Q  19 tagggggccaaaatcgcaacttg---aaacatagtgggccaaaacttctattaagccttt 75  Q
    ||||||||||||||||||||||    |||||||| ||||||||||| |||||||||||||    
T  12075271 tagggggccaaaatcgcaacttctgtaaacatagggggccaaaactgctattaagccttt 12075330  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 18201410 - 18201348
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcctttaat 78  Q
    ||||||||||||||||||||||   |||| |||||||||||||| | | ||||||||||||||    
T  18201410 tagggggccaaaatcgcaacttttagaaagatagtgggccaaaagtgcaattaagcctttaat 18201348  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 282859 - 282916
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcct 73  Q
    ||||||||||||||||||||||   |||||||||  |||||||||| |||||||||||    
T  282859 tagggggccaaaatcgcaacttcttgaaacataggaggccaaaactgctattaagcct 282916  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 327436 - 327493
Alignment:
Q  19 tagggggccaaaatcgcaactt---gaaacatagtgggccaaaacttctattaagcct 73  Q
    ||||||||||||||||||||||   ||||||||| |||||| |||| |||||||||||    
T  327436 tagggggccaaaatcgcaacttcttgaaacatagggggccacaactgctattaagcct 327493  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 24679102 - 24679158
Alignment:
Q  19 tagggggccaaaatcgcaa---cttgaaacatagtgggccaaaacttctattaagcc 72  Q
    |||||||||||||||||||   |||||||||||| |||||||||||  |||||||||    
T  24679102 tagggggccaaaatcgcaatttcttgaaacatagggggccaaaactgttattaagcc 24679158  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 43078061 - 43078119
Alignment:
Q  19 tagggggccaaaatcgcaa---cttgaaacatagtgggccaaaacttctattaagcctt 74  Q
    |||||||||||||||||||   ||||||||| || |||||||| || ||||||||||||    
T  43078061 tagggggccaaaatcgcaacttcttgaaacagagggggccaaatctgctattaagcctt 43078119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 30064058 - 30064002
Alignment:
Q  19 tagggggccaaaatcgcaacttg---aaacatagtgggccaaaacttctattaagcc 72  Q
    |||||| |||||||||||||||    |||||||| ||||||||||||||||||||||    
T  30064058 taggggaccaaaatcgcaacttcttaaaacatagggggccaaaacttctattaagcc 30064002  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 53255282 - 53255344
Alignment:
Q  19 tagggggccaaaatcgcaa---cttgaaacatagtgggccaaaacttctattaagcctttaat 78  Q
    |||||||||||||||||||   ||| ||||||||  |||||||||| ||||||||||| ||||    
T  53255282 tagggggccaaaatcgcaacttcttaaaacataggaggccaaaactgctattaagcctataat 53255344  T

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