View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_low_5 (Length: 435)
Name: NF14959_low_5
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 7239201 - 7238781
Alignment:
| Q |
14 |
gagataacatagaactttttccgtaagcattctgtgatccatcatagataattcttac----cttgttcaagaggaaaaggtaacatcagctcaaaagtt |
109 |
Q |
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| T |
7239201 |
gagataacgtagaactttttccgtaagcattctgtgatccatcatagataatgcttacttaccttgttcaagaggaaaaggtaacatcagctcaaaagtt |
7239102 |
T |
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| Q |
110 |
gcagtcacattatcaccaggcataaccatcttgacatcgtcaggtaattgaacctttccggtaatgtctgcagtcttcaggtaaaattgaggcatatagt |
209 |
Q |
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| T |
7239101 |
gcagtcacattatcaccaggcataaccatcttgacatcgtcaggtaattgaacctttccggtaatgtctgcagtcttcaggtaaaattgaggcatatagt |
7239002 |
T |
|
| Q |
210 |
tagagaaaaatgcagtatgacggccaccttcatcttttgagaggacataaatttctgcttcaaacttcttatatgttttcaatgtaccaggcttggcgat |
309 |
Q |
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| T |
7239001 |
tagagaaaaatgcagtatgacggccaccttcatcttttgagaggacataaatttctgcttcaaacttcttatatgttttcaatgtaccaggcttggcgat |
7238902 |
T |
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| Q |
310 |
aacctataattttcatcaaaagaaggttttaaaaaaggagaaggaaaaattggttcattttcataaaatgaaatggtaaattgcattttgaatcaaaatc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7238901 |
aacctataattttcatcaaaagaaggttttaaaaaaggagaaggaaaaattggttcattttcataaaatgaaatggtaaattgcattttgaatcagaatc |
7238802 |
T |
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| Q |
410 |
agtttcactcaccattcccct |
430 |
Q |
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| T |
7238801 |
agtttcactcaccattcccct |
7238781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 259 - 430
Target Start/End: Original strand, 32406282 - 32406453
Alignment:
| Q |
259 |
aatttctgcttcaaacttcttatatgttttcaatgtaccaggcttggcgataacctataattttcatcaaaagaaggttttaaaaaaggagaaggaaaaa |
358 |
Q |
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| T |
32406282 |
aatttgtgcttcaaacttcttatatgttttcaatgtaccatgcttggcgataacctataattttcatcaaaagaaggttttaaaaacggagaaggaaaaa |
32406381 |
T |
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| Q |
359 |
ttggttcattttcataaaatgaaatggtaaattgcattttgaatcaaaatcagtttcactcaccattcccct |
430 |
Q |
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| T |
32406382 |
ttggttcattttcataaaatgaaatggtaaattgcattttgaatcagaatctgtttcactcaccatccccct |
32406453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 32406110 - 32406265
Alignment:
| Q |
42 |
attctgtgatccatcatagataattcttaccttgttcaagaggaaaaggtaacatcagctcaaaagttgcagtcacattatcaccaggcataaccatctt |
141 |
Q |
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| T |
32406110 |
attctgtgatccatcatagataatgcttaccatgatcaagaggataaggtaacgtcagctcaaaagttgcagtcacattatcaccaggcataaccatctt |
32406209 |
T |
|
| Q |
142 |
gacatcgtcaggtaattgaacctttccggtaatgtctgcagtcttcaggtaaaatt |
197 |
Q |
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| T |
32406210 |
gacatcatcaggtaattgtaccttttcggtaatgtctgcagtcctcaggtaaaatt |
32406265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 273
Target Start/End: Complemental strand, 37598725 - 37598562
Alignment:
| Q |
110 |
gcagtcacattatcaccaggcataaccatcttgacatcgtcaggtaattgaacctttccggtaatgtctgcagtcttcaggtaaaattgaggcatatagt |
209 |
Q |
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||||| ||||| || |||||||||||||| || |||| || || || | || |||||||| | || |||||| ||| |||||| ||||| |||||| |
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| T |
37598725 |
gcagtaacattgtctccaggcataaccattttaacattttctggcaactctacttttccggtgacatcagcagtcctcaagtaaaactgaggtctatagt |
37598626 |
T |
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| Q |
210 |
tagagaaaaatgcagtatgacggccaccttcatcttttgagaggacataaatttctgcttcaaa |
273 |
Q |
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||||||| || ||||| || || ||||| ||||| |||| ||| ||||| || ||||||||||| |
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| T |
37598625 |
tagagaagaaagcagtgtgtcgcccaccctcatcctttgtgagtacatatatctctgcttcaaa |
37598562 |
T |
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