View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14959_low_6 (Length: 401)

Name: NF14959_low_6
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14959_low_6
NF14959_low_6
[»] chr3 (2 HSPs)
chr3 (21-391)||(11613381-11613750)
chr3 (93-130)||(37788814-37788851)
[»] chr2 (2 HSPs)
chr2 (91-132)||(6988067-6988108)
chr2 (92-156)||(34339859-34339923)
[»] chr7 (1 HSPs)
chr7 (92-160)||(7623091-7623159)
[»] chr6 (1 HSPs)
chr6 (96-160)||(7354161-7354225)
[»] chr1 (1 HSPs)
chr1 (96-156)||(49517027-49517087)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 391
Target Start/End: Original strand, 11613381 - 11613750
Alignment:
Q  21 acatatcccttatataggtttactcaaatcgactttacgcgcttatagtataaactagccttttattatcttttttataacaagagataaaataaagtcg 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||     
T  11613381 acatatcccttatataggtttactcaaatcgactttccgcgcttatagtataaactagccttttattatcttttttataacaaaagataaaataaaatca 11613480  T
Q  121 aattattttcttttaagatgttagctattttcataaactaacctnnnnnnngttatgaaaacaaattgacaacggatatgacatgtccgttagttgttcc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11613481 aattattttcttttaagatgttagctattttcataaactaacctaaaaaaagttatgaaaacaaattgacaacggatatgacatgtccattagttgttcc 11613580  T
Q  221 ttaagatcgctctgaaataaataatttcaaacagacctaccagggtccaatgtgactcccagagggtttagaaataaggaaggcctttaattaatgacag 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  11613581 ttaagatcgctctgaaataaataatttcaaacagacctaccagggtccaatgtgactcccagagggtttagaaataaggaaggcctttaattgatgacaa 11613680  T
Q  321 ttgcagcaaattcaatatctataatgagattatgaactaattaaattcaaatatgtattccctatcctatg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11613681 ttgcagcaaattcaatatctataatgagattatgaactaattaaattcaaatatgtatt-cctatcctatg 11613750  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 37788814 - 37788851
Alignment:
Q  93 ttttataacaagagataaaataaagtcgaattattttc 130  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  37788814 ttttataacaaaagataaaataaagtccaattattttc 37788851  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 6988067 - 6988108
Alignment:
Q  91 ttttttataacaagagataaaataaagtcgaattattttctt 132  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  6988067 ttttctataacaaaagataaaataaagtcaaattattttctt 6988108  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 34339859 - 34339923
Alignment:
Q  92 tttttataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataa 156  Q
    |||||| ||||| ||||||||||||||| |||||||||| | |||| | | | ||||||||||||    
T  34339859 tttttaaaacaaaagataaaataaagtcaaattattttcgtataaggtataaactattttcataa 34339923  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 7623091 - 7623159
Alignment:
Q  92 tttttataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataaacta 160  Q
    |||||||||||| || |||||||||||| || | ||||  | |||| ||| ||||||||||||||||||    
T  7623091 tttttataacaaaaggtaaaataaagtccaactctttttatataagctgtaagctattttcataaacta 7623159  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 7354161 - 7354225
Alignment:
Q  96 tataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataaacta 160  Q
    |||||||| |||||||||||| ||||| ||||||| | ||||||   |||| |||||||||||||    
T  7354161 tataacaaaagataaaataaaatcgaactattttcatataagatacaagctgttttcataaacta 7354225  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 49517027 - 49517087
Alignment:
Q  96 tataacaagagataaaataaagtcgaattattttcttttaagatgttagctattttcataa 156  Q
    |||||||| ||||||||||||||| |||| ||||| |||||| | | |||| |||||||||    
T  49517027 tataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

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