View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14959_low_8 (Length: 337)
Name: NF14959_low_8
Description: NF14959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14959_low_8 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 100 - 333
Target Start/End: Complemental strand, 8350786 - 8350553
Alignment:
| Q |
100 |
ttcatggaatgtacatgttggagggtatgatatgcaaaacttgtttgattcatatgcatttgctcaccatggttttaccatgcacgatgttaaaaggttg |
199 |
Q |
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| T |
8350786 |
ttcatggaatgtacatgttggagagtatgatatgcaaaacttgtttgattcatatgcatttgctcaccatggttttaccatgcacgatgttaaaaggttg |
8350687 |
T |
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| Q |
200 |
atactaatcaatacctaaaataagtttatgcagaattctatgaactttctttttatttccaaagagatagcaggttcaatataagtgttagaaaaagttg |
299 |
Q |
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| T |
8350686 |
atgctaatcaatacctaaaataagtttatgcagaattctatgaactttctttttatttccaaagagatagcatgttcaatataagtgttagaaaaagttg |
8350587 |
T |
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| Q |
300 |
aactacgtctgaccataccgacacatttgaagag |
333 |
Q |
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| T |
8350586 |
aactacgtctgaccataccgacacatttgaagag |
8350553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 8412143 - 8412058
Alignment:
| Q |
27 |
atatcttataaggacatgccttcaaacatgtataaaaactgtttgacaaaaggcatgaaagaaggagcaaggtttcatggaatgta |
112 |
Q |
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| T |
8412143 |
atatcttataaggaaatgccttcaaccatctatggaaactgtttgacaaaaagcgtgaaagaaggatcaaggtttcatggaatgta |
8412058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 8479879 - 8479948
Alignment:
| Q |
124 |
gtatgatatgcaaaacttgtttgattcatatgcatttgctcaccatggttttaccatgcacgatgttaaa |
193 |
Q |
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| T |
8479879 |
gtatgatatgcaacacttgtttgattcatatgcatttgctcaccattattttgccatgcataatgttaaa |
8479948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 8479759 - 8479814
Alignment:
| Q |
57 |
tataaaaactgtttgacaaaaggcatgaaagaaggagcaaggtttcatggaatgta |
112 |
Q |
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| T |
8479759 |
tatagaaactgtttgacaaactgcacgaaagaaggagcaaggtttcatggaatgta |
8479814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 8451646 - 8451605
Alignment:
| Q |
124 |
gtatgatatgcaaaacttgtttgattcatatgcatttgctca |
165 |
Q |
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| T |
8451646 |
gtatgatatgcaacacttgtttgattcatatgcatttgctca |
8451605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 8350818 - 8350783
Alignment:
| Q |
15 |
agagacagggggatatcttataaggacatgccttca |
50 |
Q |
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| T |
8350818 |
agagacagggggatatcttataaggacatgccttca |
8350783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 8436639 - 8436600
Alignment:
| Q |
286 |
gttagaaaaagttgaactacgtctgaccataccgacacat |
325 |
Q |
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| T |
8436639 |
gttagaaaaagttgaactatgtctgaccataccgacacat |
8436600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 8427353 - 8427433
Alignment:
| Q |
227 |
atgcagaattctatgaactttctttttat---ttccaaagagatagcaggttcaatataagtgttagaaaaagttgaacta |
304 |
Q |
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| T |
8427353 |
atgcagaattctatgaactttttttttttattttctaaagagatagcatgttcagagtaagtgttagaaaatgttgaacta |
8427433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 9322 - 9240
Alignment:
| Q |
227 |
atgcagaattctatgaactttcttttt--atttccaa---agagatagcaggttcaatataagtgttagaaaaagttgaacta |
304 |
Q |
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| T |
9322 |
atgcagaattctatgaactttttttttttatttctaataaagagatagcatgttcagagtaagtgttagaaaaagttgaacta |
9240 |
T |
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