View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1495_high_2 (Length: 436)
Name: NF1495_high_2
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 3152596 - 3153000
Alignment:
| Q |
1 |
ttgtttacatgttacagtgtctcagcatacgaaaagcttcgataatctcaacgttttctttgacaaatggtctcaagcagttcataccaaccatcaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152596 |
ttgtttacatgttacagtgtctcagcatactaaaagcttcgataatctcaacgttttctttgacaaatggtctcaagcagttcataccaaccatcaaggt |
3152695 |
T |
|
| Q |
101 |
ggagaaatgattgattagtttctctatacatgttgtagtttcaacaagtttcatagctttcgctgctttgaagaagtgattaatggtttataattaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
3152696 |
ggagaaatgattgattagtttctctatacatgctgtagtttcaacaagattcatagctttcgctgctttgaagaagtgatta--------------atgg |
3152781 |
T |
|
| Q |
201 |
tttatatggacactatttcatcaaatggttgttttatctatttaggaacatgatatatttatgtcattggttttattttcatttcgcctttcaatattaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3152782 |
tttatatggacactatttcatcaaatggttgttttatctatttaggaacatgatatatttatgtcattgattttattttcatttcgcctttcaatattaa |
3152881 |
T |
|
| Q |
301 |
aatttaaaaatcgattatccgttttgtttcacattgatcttgtctaaattttcttattgttttaatccgtattcaagatacatgactatgaaattctgaa |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
3152882 |
aatttaaaaatcgattatctgttttgtttcacattgatcttgtctaaattttctcattgttttaatccgtattcaagatacattactctgaaattctgaa |
3152981 |
T |
|
| Q |
401 |
agtgatgaagacctcaatg |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
3152982 |
agtgatgaagacctcaatg |
3153000 |
T |
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