View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1495_high_5 (Length: 352)
Name: NF1495_high_5
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3152602 - 3152255
Alignment:
| Q |
1 |
taaacaaaaagtaagtataatgtaagcaaatgcaaataaattacaacgtaaaataacacttggagtcttgtgaaaatatttacctccttcacaccaattt |
100 |
Q |
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| T |
3152602 |
taaacaaaaagtaagtataatgtaagcaaatgcaaataaattacaacgtataataacacctggagtcttgtgaaaatatttacctccttcacaccaattt |
3152503 |
T |
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| Q |
101 |
tgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattggagtcacacgcaagtcatctgc |
200 |
Q |
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| T |
3152502 |
tgatgactatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattggagtcacacgcaagtcatctgc |
3152403 |
T |
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| Q |
201 |
caacatgtatgttgatggtcctctagcatgatgccaccaaca--cccatcctaaaccttgaaatgtagatgatgaatgaaaatacttaagaccaaccgat |
298 |
Q |
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| T |
3152402 |
caacatgtatgttgatggtcctctagcatgatgccaccaacacccccatcctaaaccttgaaatgtagatgattaatgagaatacttaagaccaaccgat |
3152303 |
T |
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| Q |
299 |
ttaagcttatatggtacaaacttatcaggaacaccattattattcttc |
346 |
Q |
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| T |
3152302 |
ttaagcttatatggtacaaacttatcaggaacaccattattattcttc |
3152255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 24231284 - 24231425
Alignment:
| Q |
81 |
tacctccttcacaccaattttgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattgga |
180 |
Q |
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| T |
24231284 |
tacctccttgacaccaattttgataactctttcctccaaatcagatagtgggacttttgatctttttagaagtgacatagtagaaatggacgacattgga |
24231383 |
T |
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| Q |
181 |
gtcacacgcaagtcatctgccaacatgtatgttgatggtcct |
222 |
Q |
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| T |
24231384 |
ctcacacacaagtcgtctgtcaccatatacattgatggtcct |
24231425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 3493596 - 3493753
Alignment:
| Q |
65 |
gtcttgtgaaaatatttacctccttcacaccaattttgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtaga |
164 |
Q |
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| T |
3493596 |
gtcttgagaaaatgcttacctccttcacaccaattttgataactctttcttccaaatcagatagacgaacttttgatcttttgagaaacaacattgtaga |
3493695 |
T |
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| Q |
165 |
tatggacgacattggagtcacacgcaagtcatctgccaacatgtatgttgatggtcct |
222 |
Q |
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| T |
3493696 |
tattgacgacattagactcacaaacaagctatcagtcaccatgtacgttgatggtcct |
3493753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 24239513 - 24239364
Alignment:
| Q |
80 |
ttacctccttcacaccaattttgatgtctatttcctccaaatcagacagaggaactttggatctatttagatatgacatagtagatatggacgacattgg |
179 |
Q |
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|||||||| | ||||||||| ||||| | |||||||| || ||||| ||||| || || || ||| |||||||||| | || || || || |||||||| |
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| T |
24239513 |
ttacctccgttacaccaattctgatgaccatttcctctaagtcagatagagggacgtttgagctaattagatatgaaagagcagttacagaagacattgg |
24239414 |
T |
|
| Q |
180 |
agtcacacgcaagtcatctgccaacatgtatgttgatggtcctctagcat |
229 |
Q |
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| T |
24239413 |
agtcactgccaagtcgtctgtcaccatgaacattgatggccctctagcat |
24239364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 24150043 - 24150107
Alignment:
| Q |
162 |
agatatggacgacattggagtcacacgcaagtcatctgccaacatgtatgttgatggtcctctag |
226 |
Q |
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|||||| |||||||||||||||||| |||||| || | || |||| ||||| |||||||||||| |
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| T |
24150043 |
agatattgacgacattggagtcacaaccaagtcgtcggtcaccatgaatgttaatggtcctctag |
24150107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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