View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1495_high_7 (Length: 282)
Name: NF1495_high_7
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_high_7 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 23925 - 24181
Alignment:
| Q |
9 |
tcaaagcagttggcataatcaaatgtgataaaaatgatgtggatttcatcattagagattttgaaaagcttatcgtagatggaagaaggtatgttcgttg |
108 |
Q |
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| T |
23925 |
tcaaagcagttggcataatcaaatgtgataaaaatgaagtggatttcatcattagagattttgaaaaactaatcgtagatggaagaaggtatgttcgttg |
24024 |
T |
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| Q |
109 |
tgctcccagtgataagtatttggacaacattcttataactgggcttgacaaagaggttcctgagactgaaattttggatgtactaagatctgctactagt |
208 |
Q |
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| T |
24025 |
tgctcccagtgataagtatttggacaacattcttataactgggcttgacaaagaggttcctgagactaaaattttggatatactaagatctgctactagt |
24124 |
T |
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| Q |
209 |
agaaggattctagattttttctttaagagaggagatgctgttgaaaatccaccatgc |
265 |
Q |
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| T |
24125 |
agaaggattctagattttttctttaagagaggagaagctgttgaaaatccaccatgc |
24181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 3880013 - 3880269
Alignment:
| Q |
9 |
tcaaagcagttggcataatcaaatgtgataaaaatgatgtggatttcatcattagagattttgaaaagcttatcgtagatggaagaaggtatgttcgttg |
108 |
Q |
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| T |
3880013 |
tcaaagcagttggcataatcaaatgtgataaaaatgacgtggatttcatcattagagattttgaaaacctcatcgtagatggaagaaggtatgttcgttg |
3880112 |
T |
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| Q |
109 |
tgctcccagtgataagtatttggacaacattcttataactgggcttgacaaagaggttcctgagactgaaattttggatgtactaagatctgctactagt |
208 |
Q |
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| T |
3880113 |
tgctcccagtgataagtatttggacaacattcttataactgggcttgacaaagaggttcctgagactaaaattttggatatactaagatctgctactagt |
3880212 |
T |
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| Q |
209 |
agaaggattctagattttttctttaagagaggagatgctgttgaaaatccaccatgc |
265 |
Q |
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| T |
3880213 |
agaaggattctagattttttctttaagagaggagacgctgttgaaaatccaccatgc |
3880269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 39319636 - 39319410
Alignment:
| Q |
29 |
aaatgtgataaaaatgatgtggatttcatcattagagattttgaaaagcttatcgtagatggaagaaggtatgttcgttgtgctcccagtgataagtatt |
128 |
Q |
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| T |
39319636 |
aaatgtgataaaaatgatgttgatttcatcttgagagatttttataacctt---gcaatcggagggaggtatgtccgcagtgcactcagtaataagtcca |
39319540 |
T |
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| Q |
129 |
tggacaacattcttataactgggcttgacaaagaggttcctgagactgaaattttggatgtactaagatctgctactagtagaaggattctagatttttt |
228 |
Q |
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| T |
39319539 |
tggacagtattgtgataagtgggcttgacaaagaacttctagaaactgaaattttggatgtactaagaactgctacaagtagaaggattctagacttttt |
39319440 |
T |
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| Q |
229 |
ctttaagagaggagatgctgttgaaaatcc |
258 |
Q |
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| T |
39319439 |
cttggtgaggggagatgctgttggaaatcc |
39319410 |
T |
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