View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1495_low_1 (Length: 631)
Name: NF1495_low_1
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 22 - 327
Target Start/End: Complemental strand, 2510473 - 2510171
Alignment:
| Q |
22 |
atgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2510473 |
atgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttagaatt |
2510374 |
T |
|
| Q |
122 |
tatgttaacctgatgatgattatgtttttcaggaagtttagagttcccttcagaatcagcttgaacaatgttatcaaactttctcttgaacaatgtctgc |
221 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510373 |
tatgttaacctgatgat---tatgttttttaggaagtttagcgttcccttcagaatcagcttgaacaatgttatcaaactttctcttgaacaatgtctgc |
2510277 |
T |
|
| Q |
222 |
aacttctttcaaagaagaaagctcttttagacactcatcccaactgaaactcgttaagtttaagctaatccactaaaatcttcactctcctcttaaatca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510276 |
aacttctttcaaagaagaaagctcttttagacactcatcccaactgaaactcgttaagtttaagctaatccactaaaatcttcactctcctcttaaatca |
2510177 |
T |
|
| Q |
322 |
tatttg |
327 |
Q |
| |
|
|||||| |
|
|
| T |
2510176 |
tatttg |
2510171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 2512213 - 2512020
Alignment:
| Q |
22 |
atgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
2512213 |
atgccaaacctcgcactactatccttcctgatgagacctttgaattacttttgagttttacagtgttcatgttttccactttaaccactgccttagaatt |
2512114 |
T |
|
| Q |
122 |
tatgttaacctgatga------tgattatgtttttcaggaagtttagagttcccttcagaatcagcttgaacaatgttatcaaactttctcttg |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2512113 |
tatgttaacctgatgatgatgatgattatgtttttcaggaagtttagggttccctgcagaatcagcttgaacaatgttatcaaactttctcttg |
2512020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 2496032 - 2495857
Alignment:
| Q |
34 |
gcactactatccttcctgctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatttatgttaacctg |
133 |
Q |
| |
|
|||||| | |||| |||| ||||||| | |||| |||||||||||||||| ||| |||||||| |||||||||||| ||||| |||||||||||||| | |
|
|
| T |
2496032 |
gcactaatttcctgcctgatgagaccatggaactactttcgagttttacagtgttgatgttttctgctttaaccactaccttagaatttatgttaaccag |
2495933 |
T |
|
| Q |
134 |
atgatgattatgtttttcaggaagtttagagttcccttcagaatcagcttgaacaatgttatcaaactttctcttg |
209 |
Q |
| |
|
| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2495932 |
aagatgattatatttttcaggaaggctagtgttcccttcagaatcagcttgaacaatgttatcaaactttctcttg |
2495857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 405 - 487
Target Start/End: Complemental strand, 2510093 - 2510011
Alignment:
| Q |
405 |
agctacattatgtgtgaatgtataaaatgaataattcaaccctaatctcatattggatctagtgtcttttactacttaattaa |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2510093 |
agctacattatgtgtgaatgtataaaatgaataattcaaccctaatctcatattggatctagtgtcttttactacttaattaa |
2510011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 554 - 617
Target Start/End: Complemental strand, 2509944 - 2509881
Alignment:
| Q |
554 |
tctttgataaggaacataggggttttttagtgaggcttcggtggtgaaagttttgttgcctttg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
2509944 |
tctttgataaggaacataggggttttttagtgaggcttaggtggtgacagttttgttgcctttg |
2509881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 2511994 - 2511948
Alignment:
| Q |
215 |
tgtctgcaacttctttcaaagaagaaagctcttttagacactcatcc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2511994 |
tgtctgcaacttctttcaaagaagaaagctcctttagacactcatcc |
2511948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 2495825 - 2495785
Alignment:
| Q |
221 |
caacttctttcaaagaagaaagctcttttagacactcatcc |
261 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
2495825 |
caacttctttcaaagaagaaagctccttcagacactcatcc |
2495785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 4258346 - 4258303
Alignment:
| Q |
218 |
ctgcaacttctttcaaagaagaaagctcttttagacactcatcc |
261 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4258346 |
ctgcaacttctttcaaagaagcgagctcctttagacactcatcc |
4258303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University