View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1495_low_12 (Length: 224)
Name: NF1495_low_12
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41757792 - 41757575
Alignment:
| Q |
1 |
caaacttgttggaaatatttgtaatatttgatttgcagtataataatgctaaacaatctaccatagctaattaagtgaaaacagatgataggaaatggca |
100 |
Q |
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| T |
41757792 |
caaacttgttcgaaatatttgtaatatttgatttgcagtataataatgctaaacaatctaccatagctaattaagtgaaaacagatgataggaaagtgca |
41757693 |
T |
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| Q |
101 |
gaagctaattccttatgtaaaatttaatagtaa---ctccacacctagaaaccgaaaaataacacgacaattctatagaaagaaaatgtgaggtgaattc |
197 |
Q |
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|||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41757692 |
gaagctcattccttatgtggaatttaatagtaactcctccacacctagaaaccgaaa------acgacaattctatagaaagaaaatgtgaggtgaattc |
41757599 |
T |
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| Q |
198 |
gctaggcatggttggcgaaaacac |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
41757598 |
gctaggcatggttggcgaaaacac |
41757575 |
T |
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