View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1495_low_3 (Length: 405)
Name: NF1495_low_3
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 39628334 - 39627956
Alignment:
| Q |
14 |
agatgcttataaatattacaatttgtctaaaaattgactgatactcaagtttttgcgagcatatccaaaattcaaaagaatcaaaattgatacgtgtaat |
113 |
Q |
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| T |
39628334 |
agatgcttataaatattacaatttgtctaaaaattgactgatactcaagtttttgcgagcatatccaaaattcaaaagaatcaaaattgatacgtgtagt |
39628235 |
T |
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| Q |
114 |
cattaaacttacgtattccttcaaaatcatcaacaagcctagctccaggtatggtcacaatgctataagataataatatttcacgtatttcagtagttta |
213 |
Q |
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| T |
39628234 |
cattaaacttacgtattccttcaaaatcatcaacaagcctagctccaggtatggtcgcaatgctataagataataatatttcacttatttcagtagttta |
39628135 |
T |
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| Q |
214 |
atactttccagaaatgcaagcaaaaaacaaacacacaaaataaacctttgcgccactcctacataaagttgtatttattgacaatgtagagtcaagaaga |
313 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39628134 |
atactttccagaaatgcaagcaaaaaacaaacaca-aagataaacctttgcgccactcctacataaagttgtatttattgacaatgtagagtcaagaaga |
39628036 |
T |
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| Q |
314 |
catttaggccttttcatgttgttaagcattatatcaaggcaaatgctagattatcgccaacatttcaaaactatatactg |
393 |
Q |
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| T |
39628035 |
catttaggccttttcatgttgttaagcattatatcaaggcaaatgctagattatcgccaacatttcaaaactatatactg |
39627956 |
T |
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