View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1495_low_8 (Length: 273)
Name: NF1495_low_8
Description: NF1495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1495_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 17275666 - 17275810
Alignment:
| Q |
24 |
aagtagaagaagcaccaatcttatctaaaaaatctgcacaactgaaaagcatatgatggttcattttttaaaaaggtggaaatatattgaatattcagac |
123 |
Q |
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| T |
17275666 |
aagtagaagaagcaccaatcctaattaggaaatctgcagagttgaaaagcatatgatagttcattttttaaaaaggtggaaatacattgaatattcagac |
17275765 |
T |
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| Q |
124 |
cctctcnnnnnnnnnntggaatgttcagacccaacaaagagagtactt |
171 |
Q |
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| T |
17275766 |
cctct---aaaaaaaatggaatgttcagacccaacaaagagagtactt |
17275810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 44287295 - 44287247
Alignment:
| Q |
18 |
actctgaagtagaagaagcaccaatcttatctaaaaaatctgcacaact |
66 |
Q |
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| T |
44287295 |
actctgaagtagaagacgcaccaatcttaactagaaaatctgcacaact |
44287247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 6797383 - 6797430
Alignment:
| Q |
16 |
atactctgaagtagaagaagcaccaatcttatctaaaaaatctgcaca |
63 |
Q |
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||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
6797383 |
atactctgaagtagaagaagcaccagtcttagctaggaaatctgcaca |
6797430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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