View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14960_high_3 (Length: 406)
Name: NF14960_high_3
Description: NF14960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14960_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 60 - 286
Target Start/End: Original strand, 44211843 - 44212062
Alignment:
| Q |
60 |
gaaccattaattagttttga---atattttcttaaaaagattcttatattcatggatatatagggtggcatggaaatgttgagcaacgtaccagaggaat |
156 |
Q |
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| T |
44211843 |
gaaccattaattagtttttattaatattttcttaaaaagattcttatattcatggatatatagggtggcatggaaatgttgagcaacgtaccagaggaat |
44211942 |
T |
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| Q |
157 |
agcaatggctacaactacaacaacagctccaacagttgaacagggcatgagccgttgaagtgagtgaagaagatccataattcattcatgcaattgtgta |
256 |
Q |
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| T |
44211943 |
agcaatggctacaactacaacaacagctccaacagttgaacatggcatgagccgttgaagtgagtgaaga---tccataattcat----gcaattgtgtt |
44212035 |
T |
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| Q |
257 |
aaattcataattaatcttcgttttgcagcc |
286 |
Q |
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| T |
44212036 |
---ttcataattaatcttcgttttgcagcc |
44212062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 44212557 - 44212669
Alignment:
| Q |
286 |
cgaataagttaagcttcattttatcttaagtctctgtaaactcaaaacatcgtcactat-----------caagtgattttccaatgaattatgaaagta |
374 |
Q |
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| T |
44212557 |
cgaataagttaagcttcattttatcttaagtctctgtaaactcaaaacatcgtgactatcaagttttcaacaagtgattttccaatgaattatgaaagta |
44212656 |
T |
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| Q |
375 |
acttcctccatct |
387 |
Q |
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| T |
44212657 |
acttcctccatct |
44212669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44211790 - 44211825
Alignment:
| Q |
1 |
cttgagaaacgtggatttaacatggtcattggtatg |
36 |
Q |
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| T |
44211790 |
cttgagaaccgtggatttaacatggtcattggtatg |
44211825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 6496301 - 6496408
Alignment:
| Q |
116 |
atagggtggcatggaaatgttgagcaacgtaccagaggaatagcaatggctacaactacaacaacagctccaacagttgaacagggcatgagccgttgaa |
215 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |
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| T |
6496301 |
atagggtggcatggaaatgttgagcaacggactagaggaatagcaatggctacaact---acaacagctccagcagttgaacagggcatgagtcgttgaa |
6496397 |
T |
|
| Q |
216 |
gtgagtgaaga |
226 |
Q |
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||||||||||| |
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| T |
6496398 |
gtgagtgaaga |
6496408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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