View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14960_high_4 (Length: 345)

Name: NF14960_high_4
Description: NF14960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14960_high_4
NF14960_high_4
[»] chr4 (14 HSPs)
chr4 (13-226)||(5885871-5886083)
chr4 (13-226)||(5847656-5847868)
chr4 (28-226)||(5565271-5565468)
chr4 (13-226)||(3749423-3749635)
chr4 (13-176)||(5613627-5613789)
chr4 (17-230)||(5582858-5583070)
chr4 (26-226)||(5858535-5858734)
chr4 (16-226)||(5553680-5553889)
chr4 (13-226)||(5894716-5894928)
chr4 (16-226)||(5852533-5852742)
chr4 (17-230)||(5570651-5570863)
chr4 (28-226)||(5605589-5605786)
chr4 (61-124)||(251992-252055)
chr4 (155-230)||(5538925-5539000)
[»] scaffold0454 (1 HSPs)
scaffold0454 (58-226)||(907-1074)
[»] chr8 (1 HSPs)
chr8 (58-226)||(1485725-1485892)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 5885871 - 5886083
Alignment:
Q  13 aatattaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagca 112  Q
    ||||||||| |||||||||||||| ||||||| |||||||||| |||| |||||||||| ||||||||||| | |||| |||||||||||||||||||||    
T  5885871 aatattaggcaactgtatctagatggtataagtataacatctccgggatatgaatggagtaatgctttgttaccgctgcgtgacttgcaagagttgagca 5885970  T
Q  113 tgtcaaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccag 212  Q
    |||  |||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  5885971 tgtataactgtagtctatcaggaccccttgattcct-ccctttcaaaactagagaacctatcggtcattattcttggcgagaacaatttttcatccccag 5886069  T
Q  213 tgccacaaacattt 226  Q
    ||||||||||||||    
T  5886070 tgccacaaacattt 5886083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 5847656 - 5847868
Alignment:
Q  13 aatattaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagca 112  Q
    ||||||||| || ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||   || ||||| ||||| |||||||||    
T  5847656 aatattaggcaaatgtatctagatggtataagtataacatctcggggacatgaatggagcaatgctttgttgcctttgcgtgacctgcaaaagttgagca 5847755  T
Q  113 tgtcaaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccag 212  Q
    ||||  | |||| |||||||||||| |||||||||| ||||  ||| ||||||||||||  | |||||| |||||||||| ||||| |||||||||||||    
T  5847756 tgtctgattgtgatctatcaggaccccttgattctt-ccctaacaagactagagaacctgacggtcattgttcttggtgagaacaacttttcatccccag 5847854  T
Q  213 tgccacaaacattt 226  Q
    ||||||||||||||    
T  5847855 tgccacaaacattt 5847868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 5565468 - 5565271
Alignment:
Q  28 tatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtcaaactgtggtc 127  Q
    ||||||||| ||||||| ||| ||||||  ||| |||||||||||| |  |||||||| | |  ||||| | ||||| ||  ||||||||| ||||||||    
T  5565468 tatctagatggtataagtataccatctcaaggatatgaatggagcagtcttttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtc 5565369  T
Q  128 tatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgccacaaacattt 226  Q
    | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5565368 tttcaggaccccttgattcttccc-tttcaaaactagagaacctatcagtcattattcttggtgacaataatttttcatccccagtgccacaaacattt 5565271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 3749635 - 3749423
Alignment:
Q  13 aatattaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagca 112  Q
    ||||||||| |||| ||||||||| | ||||| ||||||||||  |||||||||| ||||||||||||||||| | || ||||||||||||| |||||||    
T  3749635 aatattaggcaactatatctagatgggataagtataacatctcgaggacatgaattgagcaatgctttgttgccgttgcgtgacttgcaagaattgagca 3749536  T
Q  113 tgtcaaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccag 212  Q
    ||||  |||||| | |||||||||| |||||||||| ||||  ||| ||||||||||||||||||||||||||||| ||  |||||||||||||| ||||    
T  3749535 tgtcttactgtgatttatcaggaccccttgattctt-ccctaacaagactagagaacctatcagtcattattcttgatgggaacaatttttcatcaccag 3749437  T
Q  213 tgccacaaacattt 226  Q
    ||||  ||||||||    
T  3749436 tgccgaaaacattt 3749423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 5613789 - 5613627
Alignment:
Q  13 aatattaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagca 112  Q
    ||||| ||| |||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||   || | ||| | |||||  ||||||    
T  5613789 aatatgaggcaactgtatctagatggtataagtataacatctcagggacatgaatggatcaatgctttgttgcctttgagcgacctacaagaactgagca 5613690  T
Q  113 tgtcaaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcag 176  Q
    |||| ||||||  |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  5613689 tgtctaactgtaatctatcaggacctcttgattctt-ccctttcaaaactagagaacctatcag 5613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 5582858 - 5583070
Alignment:
Q  17 ttaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtc 116  Q
    ||||||| |||||||||||| || |||| |||| | ||| |||||| |||||||| |||||||||||||  |||  | || | ||||  ||||| |||||    
T  5582858 ttaggaagctgtatctagatggtgtaagtataaaagctcagggacaagaatggaggaatgctttgttgcccctgcctaacctccaagtattgagtatgtc 5582957  T
Q  117 aaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgcc 216  Q
      | |||| ||||||||| || ||||||||||||| |  ||| |||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  5582958 ttattgtgatctatcaggtccccttgattcttccc-taacaagactaaagaacctatcagtcattattcttgatgggaacaatttttcatccccagtgcc 5583056  T
Q  217 acaaacattttcca 230  Q
    ||||||||||||||    
T  5583057 acaaacattttcca 5583070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 5858734 - 5858535
Alignment:
Q  26 tgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtcaaactgtgg 125  Q
    |||||||||||||| |||| ||| || ||  |||||||||||||| |||||||||||||| | || |  || | ||||| |||||||||||   ||||||    
T  5858734 tgtatctagatagtgtaagtatatcagctaagggacatgaatggatcaatgctttgttgccgttgcgaaacctacaagaattgagcatgtcttcctgtgg 5858635  T
Q  126 tctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgccacaaacatt 225  Q
    ||||| ||| || ||||||||||||| |  ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||  |||||||    
T  5858634 tctattaggtccccttgattcttccc-taacaaaactagagaacctatcagtcattattcttgatgagaactatttttcatccccagttcctgaaacatt 5858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 5553889 - 5553680
Alignment:
Q  16 attaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgt 115  Q
    |||||| |||||||| ||||  ||||||   ||||||||  ||||| ||||||||||||||||||||||| |||||||||  | ||||||||||||||||    
T  5553889 attaggcaactgtatttagaaggtataactctaacatctgagggacctgaatggagcaatgctttgttgccgctgtgtgaactacaagagttgagcatgt 5553790  T
Q  116 caaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgc 215  Q
      ||||||| |||| |||| ||||| ||||||| |||| ||||||||| | |||||||| ||||||||||||| |   ||||||||||| ||||| || |    
T  5553789 ataactgtgatctagcagggccactagattctt-ccctatcaaaactaaaaaacctatcggtcattattcttgataggaacaatttttcttcccccgttc 5553691  T
Q  216 cacaaacattt 226  Q
    || ||||||||    
T  5553690 cagaaacattt 5553680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 5894716 - 5894928
Alignment:
Q  13 aatattaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagca 112  Q
    ||||||||| |||||||||||||| ||||||  |||||||||| | ||||| ||||||||||||||||| | |   || ||||| | ||||| |||||||    
T  5894716 aatattaggcaactgtatctagatggtataactataacatctcagagacataaatggagcaatgctttgatacctttgcgtgacctacaagaattgagca 5894815  T
Q  113 tgtcaaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccag 212  Q
    |||| || |||| | | |||||| | |||||||||| |||| |||| |||| ||||||| |||||||||||||||  |   ||||||||||||||| ||     
T  5894816 tgtctaattgtgatttgtcaggatcccttgattctt-ccctatcaagactacagaacctgtcagtcattattctttatcgaaacaatttttcatcctcat 5894914  T
Q  213 tgccacaaacattt 226  Q
    ||||| ||||||||    
T  5894915 tgccagaaacattt 5894928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 5852533 - 5852742
Alignment:
Q  16 attaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgt 115  Q
    |||||| |||||||||||||   |||||   ||||||||  ||| || ||||||||||||||||||||||  ||| ||||  | |||  ||||||| |||    
T  5852533 attaggcaactgtatctagaagatataactctaacatctgaggggcaggaatggagcaatgctttgttgccactgcgtgaactacaaatgttgagcttgt 5852632  T
Q  116 caaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgc 215  Q
      || |||| |||| |||| |||||||||||||||| | |||||||||  ||||||||||||||||||||||| |   ||||||||||| ||||| || |    
T  5852633 ataaatgtgatctagcagggccacttgattcttccc-tatcaaaactaaggaacctatcagtcattattcttgataggaacaatttttcttcccccgttc 5852731  T
Q  216 cacaaacattt 226  Q
    || ||||||||    
T  5852732 cagaaacattt 5852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 5570651 - 5570863
Alignment:
Q  17 ttaggaaactgtatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtc 116  Q
    ||||||| |||||||||||| || ||||  ||| | ||| |||||| ||||||||  |||||||||| | |||| || || | ||||  ||||| |||||    
T  5570651 ttaggaagctgtatctagatggtgtaagtttaaaagctcagggacaagaatggagtgatgctttgtttccgctgcgtaacctccaagtattgagtatgtc 5570750  T
Q  117 aaactgtggtctatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgcc 216  Q
      | |||| |||||||||||| |||  |||||||| |  ||| |||| |||||||||||||||||||||||| ||  ||| |||| ||||||| ||||||    
T  5570751 ttattgtgatctatcaggacccctttcttcttccc-taacaagactaaagaacctatcagtcattattcttgatgggaactatttctcatccctagtgcc 5570849  T
Q  217 acaaacattttcca 230  Q
    | ||||||||||||    
T  5570850 agaaacattttcca 5570863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 5605786 - 5605589
Alignment:
Q  28 tatctagatagtataagcataacatctctgggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtcaaactgtggtc 127  Q
    ||||||||| ||||||| ||| || |||  ||| |||||||||||| |  |||||||| |||  ||||| | ||||| ||  | |||||| ||||||||     
T  5605786 tatctagatggtataagtataccagctcaaggatatgaatggagcagtcttttgttgccgctccgtgacctacaagaattaggtatgtcagactgtggtt 5605687  T
Q  128 tatcaggaccacttgattcttcccctttcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgccacaaacattt 226  Q
    | |||||||| ||||||||||||| |  |||   |||||||| |||| |||||| |||||| ||  |||||||||||||||||||||||| ||||||||    
T  5605686 tttcaggaccccttgattcttccc-tagcaaggttagagaacttatctgtcattcttcttgatgggaacaatttttcatccccagtgccagaaacattt 5605589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 251992 - 252055
Alignment:
Q  61 catgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtcaaactgtg 124  Q
    ||||||||| ||||||||||||||| |||||||||  ||||||||||||||||||| |||||||    
T  251992 catgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtg 252055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 5538925 - 5539000
Alignment:
Q  155 tcaaaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgccacaaacattttcca 230  Q
    |||| ||||||||| |||||  |||||||||| | ||  ||||||||||| |||||||||||  ||||||||||||    
T  5538925 tcaagactagagaatctatcgatcattattctcgatggaaacaatttttcttccccagtgcctgaaacattttcca 5539000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 1074 - 907
Alignment:
Q  58 ggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtcaaactgtggtctatcaggaccacttgattcttcccctttca 157  Q
    |||||||||||||||||||| ||||||| |||| ||||  |||||| ||||||||||   || ||| |||||||||||||  ||||||| | ||||||||    
T  1074 ggacatgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatgagcaattgtagtctatcaggacccgttgattcct-ccctttca 976  T
Q  158 aaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgccacaaacattt 226  Q
    ||||||||||||||| |  |||||||||||| | | |||||| ||||||| ||| | ||| ||||||||    
T  975 aaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacattt 907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 1485892 - 1485725
Alignment:
Q  58 ggacatgaatggagcaatgctttgttgctgctgtgtgacttgcaagagttgagcatgtcaaactgtggtctatcaggaccacttgattcttcccctttca 157  Q
    |||||||||||||||||||| ||||||| |||| ||||  |||||| ||||||||||   || ||| |||||||||||||  ||||||| | ||||||||    
T  1485892 ggacatgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatgagcaattgtagtctatcaggacccgttgattcct-ccctttca 1485794  T
Q  158 aaactagagaacctatcagtcattattcttggtgacaacaatttttcatccccagtgccacaaacattt 226  Q
    ||||||||||||||| |  |||||||||||| | | |||||| ||||||| ||| | ||| ||||||||    
T  1485793 aaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacattt 1485725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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