View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14960_high_7 (Length: 295)
Name: NF14960_high_7
Description: NF14960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14960_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 47151246 - 47151510
Alignment:
| Q |
21 |
tatgtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaactttgttttgaaattttttgtttaggttgaagagagtagatacttgtttg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47151246 |
tatgtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaactttgttttgaaatttt--gtttaggttgaagagagtagatacttgtttg |
47151343 |
T |
|
| Q |
121 |
aagcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgagtccagcaacacctctttcttttattgattttatcataag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47151344 |
aagcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgaatccagcaacacctctttcttttattgattttatcataag |
47151443 |
T |
|
| Q |
221 |
aagacttggattgaaagatcatctaatttgttgggagtttcttaagagatgtgaaggtgttcatctc |
287 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47151444 |
aagacttggattgaaagaccatctaatttgttgggagtttcttaagagatgtgaaggtgttcttctc |
47151510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University