View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14960_low_12 (Length: 210)
Name: NF14960_low_12
Description: NF14960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14960_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 40921373 - 40921551
Alignment:
| Q |
20 |
tggatggtcttctcaatcatgcacatatcaactcgaccggagagatagagataagttttgagtaaatctccatgtctattttcttcagcggtccaagagc |
119 |
Q |
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| T |
40921373 |
tggatagtcttctcaatcatgcacatatcaactcgaccggagagatagagataagttttgagtaaatctccatgtctattttcttcagcggtccaagagc |
40921472 |
T |
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| Q |
120 |
gtgaccatatagcccatggtgtgagacttgaaccagtctcgtcgccaactccatccaacttgtttatccatgtttggta |
198 |
Q |
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| T |
40921473 |
gtgaccatatagcccatggtgagagacttgaaccagattcgtctccaactccatccaacttgtttatccatgtttggta |
40921551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 40946294 - 40946478
Alignment:
| Q |
14 |
aaataatggatggtcttctcaatcatgcacatatcaactcgaccggagagatagagataagttttgagtaaatctccatgtctattttcttcagcggtcc |
113 |
Q |
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| T |
40946294 |
aaatattggatagtcttctcaatcatgcacatatcaactcgaccggagagatagagataagttttgagtaaatctccatgtctattttcttcggcggtcc |
40946393 |
T |
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| Q |
114 |
aagagcgtgaccatatagcccatggtgtgagacttgaaccagtctcgtcgccaactccatccaacttgtttatccatgtttggta |
198 |
Q |
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| T |
40946394 |
aagagcgtgaccatatagcccatggtgagagacttgaaccagattcgtctccaactccatccaacttgtttatccatgtttggta |
40946478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 40743046 - 40742862
Alignment:
| Q |
14 |
aaataatggatggtcttctcaatcatgcacatatcaactcgaccggagagatagagataagttttgagtaaatctccatgtctattttcttcagcggtcc |
113 |
Q |
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| T |
40743046 |
aaataatgaatggtcttctcaatcatgtgcatatcaactcgaccagagagatagagataagttttgagtaaatatccatgtctattctcttcagcggtcc |
40742947 |
T |
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| Q |
114 |
aagagcgtgaccatatagcccatggtgtgagacttgaaccagtctcgtcgccaactccatccaacttgtttatccatgtttggta |
198 |
Q |
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| T |
40742946 |
aagaacgtgaccatatagcccatggtgagagacttgaaccactttcatccctaaccccatccaacttgtttatccatgtttggta |
40742862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 40915140 - 40915318
Alignment:
| Q |
20 |
tggatggtcttctcaatcatgcacatatcaactcgaccggagagatagagataagttttgagtaaatctccatgtctattttcttcagcggtccaagagc |
119 |
Q |
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| T |
40915140 |
tggatagtcttctcgatcatgtgcatatcaacccgaccagaaagatagagataagttttaagcaaatctccatgcctgttttcctcggcagtccaagagc |
40915239 |
T |
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| Q |
120 |
gtgaccatatagcccatggtgtgagacttgaaccagtctcgtcgccaactccatccaacttgtttatccatgtttggta |
198 |
Q |
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| T |
40915240 |
gtgtccatatggcccatggactgttgcttgcaccagtctcatcacaaatcccatcaaactggtttatccatgattggta |
40915318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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